ID:

eca-mir-9046

 Coordinate:

chr1:127270581-127270695 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-51.5 -51.3 -51.3

Sense Strand Reads

CATAGAGCAGCGTGAACATGCGGTTGACGGTATAGACGAGGTCACCGCGCACCACGGCCGTGAAAAGTGCCCCCTTGCTGTTGACGAACTGGCCGGGCAGCGCCGTCCACTGGCCCGTGGCCAGGTTGAGGCAGTCGATGGCACAGTGTAGGAAGTCGTCGGAAGGTCCGTTGCGCACCACATAGAGACTGTCGCGGTGGGCCACCATGCAGTGG

***********************************....(((....(((((..((((((........(((((....((((((....))).))).)))))(((((.....((((((...)))))).....))).))(((((((............)))))))...)).)))))))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................TGCTGTTGACGAACTGGCCGGGCA.................................................................................................................... 24 0 1 2.00 2 2
...........................................................................TGCTGTTGACGAACTGGCCGGGCATA.................................................................................................................. 26 2 1 2.00 2 2
...........................................................................TGCTGTTGACGAACTGGCCGGGCAGTA................................................................................................................. 27 2 1 2.00 2 2
.......................................................................................................................................................................CCGTTGCGCACCACATAGAGACTGTCT..................... 27 1 1 1.00 1 1
......................................................................................................................................................................................TAGAGACTGTCGCGGTGGGCCACCATGC..... 28 0 1 1.00 1 1
..........................................................................................................................................TGGCACAGTGTAGGAAGTCGTCGGAAAA................................................. 28 2 1 1.00 1 1
.................................................................................................................................................................................CCACATAGAGACTGTCGCGGTGGGC............. 25 0 1 1.00 1 1
...........................................................................TGCTGTTGACGAACTGGCCGGGCAGC.................................................................................................................. 26 0 1 1.00 1 1
...........GTGAACATGCGGTTGACG.......................................................................................................................................................................................... 18 0 1 1.00 1 1
......................................................................................................................................................................................TAGAGACTGTCGCGGTGGGCCTCCATGCA.... 29 1 1 1.00 1 1
..TAGAGCAGCGTGAACATGCGGTTGACGGTA....................................................................................................................................................................................... 30 0 1 1.00 1 1
.......................................................................................................................................................................CCGTTGCGCACCACATAGAGACTGTCGTTA.................. 30 3 1 1.00 1 1
..........................................................................................................................................TGGCACAGTGTAGGAAGTCGTCGGAAGGTC............................................... 30 0 1 1.00 1 1
......................................................................................................................................................................................TAGAGACTGTCGCGGTGGGCCACCATGCA.... 29 0 1 1.00 1 1
............................................................TGAAAAGTGCCCCCTTGCTGTTGACGAAC.............................................................................................................................. 29 0 1 1.00 1 1

Anti-sense strand reads

GTATCTCGTCGCACTTGTACGCCAACTGCCATATCTGCTCCAGTGGCGCGTGGTGCCGGCACTTTTCACGGGGGAACGACAACTGCTTGACCGGCCCGTCGCGGCAGGTGACCGGGCACCGGTCCAACTCCGTCAGCTACCGTGTCACATCCTTCAGCAGCCTTCCAGGCAACGCGTGGTGTATCTCTGACAGCGCCACCCGGTGGTACGTCACC

***********************************....(((....(((((..((((((........(((((....((((((....))).))).)))))(((((.....((((((...)))))).....))).))(((((((............)))))))...)).)))))))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......GTCGCACTTGTACGCCAACTGCCATATCT................................................................................................................................................................................... 29 0 1 3.00 3 3
......CGTCGCACTTGTACGCCAACTGCCAT....................................................................................................................................................................................... 26 0 1 2.00 2 2
...............................................................................................................CCGGGCACCGGTCCAACTCCGTCAGCT............................................................................. 27 0 1 1.00 1 1
..............................................................................................................................................TGTCACATCCTTCAGCAGCCTTCCAG............................................... 26 0 1 1.00 1 1
.....................................................................................................................CCCGGTCCAACTCCGTCAGCTACCGT........................................................................ 26 1 1 1.00 1 1
.......GTCGCACTTGTACGCCAACTGCCATAT..................................................................................................................................................................................... 27 0 1 1.00 1 1

Generated: 09/01/2015 at 11:32 AM