ID:

eca-mir-9045

 Coordinate:

chr1:108538275-108538409 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.0 -41.8 -41.8

Sense Strand Reads

GACAGGAGCCCTCTGTCCACAGTGACCACAAGGGTGGCAGTCTGCCGTCTGCAACACTCTGGGTGCCCACTTCTAACTCTACTGCATGTCAGCTGGAATTGGCCAATGGTGTGCTGGTAGCTTCTGAGCAGCATGCTAGGTACCAAGTTGGGCAGTAGTCTTGTTCTTGCTGTGGGTGGGAGCTGGGTGGGGACCAGTGGGGAGGGCGGCCTTTCTCTTTTCAGGTGCAGGGCTG

*******************************************************.((((...(((((((....(((.(((((((...((((((((.....(((..((((((((((.(((...)))..))))))))))))).)).)))))))))))))....)))......))))))))))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................................................................................................TACCAAGTTGGGCAGTAGTCTTGTTCTT................................................................... 28 0 1 6.00 6 6
........................................................................................................................................TAGGTACCAAGTTGGGCAGTAGTCTTGTTCT.................................................................... 31 0 1 3.00 3 3
......................................................................TTCTAACTCTACTGCATGTCAGCTG............................................................................................................................................ 25 0 1 3.00 3 3
.....................................................................................................................................TGCTAGGTACCAAGTTGGGCAGTAGTCT.......................................................................... 28 0 1 3.00 3 3
..........................................TGCCGTCTGCAACACTCTGGGTGCCC....................................................................................................................................................................... 26 0 1 2.00 2 2
......................................................................TTCTAACTCTACTGCATGTCAGCTGG........................................................................................................................................... 26 0 1 2.00 2 2
............................................................................................................................................TACCAAGTTGGGCAGTAGTCTTGTT...................................................................... 25 0 1 2.00 2 2
......................................................................................................................................GCTAGGGACAAAGTTGGGCAGTAGTC........................................................................... 26 2 1 1.00 1 1
........................................................................................................................................TAGGTACCAAGTTGGGCAGTAGTCTA......................................................................... 26 1 1 1.00 1 1
........................................................................................................................................TAGGTACCAAGTTGGGCAGTAGTCTT......................................................................... 26 0 1 1.00 1 1
........................................................CTCTGGGTGCCCACTTCTAACTCTACT........................................................................................................................................................ 27 0 1 1.00 1 1
.......................................................................................................................................CTAGGTACCAAGTTGGGCAGTAGTCTTT........................................................................ 28 1 1 1.00 1 1
............................................................................................................................................TACCAAGTTGGGCAGTAGTCTTGTTCT.................................................................... 27 0 1 1.00 1 1
........................ACCACAAGGGTGGCAGTCTGCCGTCTG........................................................................................................................................................................................ 27 0 1 1.00 1 1
.....................................................................................................................................TGCTAGGTACCAAGTTGGGCAGTAGTC........................................................................... 27 0 1 1.00 1 1
........................................................................................................................................TAGGTACCAAGTTGGGCAGTAGTCTTGTTCTT................................................................... 32 0 1 1.00 1 1
.........................................................................................................................................AGGTACCAAGTTGGGCAGTAGTCTTGTT...................................................................... 28 0 1 1.00 1 1
...............................................TCTGCAACACTCTGGGTGCCCACTTCTAA............................................................................................................................................................... 29 0 1 1.00 1 1
.............................................................................................................................GAGCAGCATGCTAGGTACCAAGTTGGGCAGTA.............................................................................. 32 0 1 1.00 1 1
...............................................TCTGCAACACTCTGGGTGCCCACTTCTAAC.............................................................................................................................................................. 30 0 1 1.00 1 1
...................................................................................GCATGTCAGCTGGAATTGGCCAATGGT............................................................................................................................. 27 0 1 1.00 1 1
...........................................................................................................................................................TAGTCTTGTTCTTGCTGTGGGTGGGAGCT................................................... 29 0 1 1.00 1 1
.............................................................................................TGGAATTGGCCAATGGTGTGCTGGTAGCT................................................................................................................. 29 0 1 1.00 1 1
.................................................TGCAACACTCTGGGTGCCCACT.................................................................................................................................................................... 22 0 1 1.00 1 1
............................................................................................................................................TACCAAGTTGGGCAGTAGTCTTGT....................................................................... 24 0 1 1.00 1 1
............................................................................................................................TGAGCAGCATGCTAGGGACCAAGTTGGGCAGT............................................................................... 32 1 1 1.00 1 1
.................................................................................................................................................................TGTTCTTGCTGTGGGTGGGAGCTGGGTGG............................................. 29 0 1 1.00 1 1
..........................................................................................................................................GGTACCAAGTTGGGCAGTAGTCTTGTT...................................................................... 27 0 1 1.00 1 1
.............................................................................TCTACTGCATGTCAGCTGGAATTGGCC................................................................................................................................... 27 0 1 1.00 1 1
............................................CCGTCTGCAACACTCTGGGTGCCCT...................................................................................................................................................................... 25 1 1 1.00 1 1
..........................................................................................................TGGTGTGCTGGTAGCTTCTGAGCAGCATA.................................................................................................... 29 1 1 1.00 1 1
............................................................................................................................................TACCAAGTTGGGCAGTAGTCTTGTTCTTT.................................................................. 29 1 1 1.00 1 1
..................................................................................................................TGGTAGCTTCTGAGCAGCATGCTAGGTACC........................................................................................... 30 0 1 1.00 1 1
............................................................................................................................................TACCAAGTTGGGCAGTAGTCTTGTTC..................................................................... 26 0 1 1.00 1 1
........................................................................................................................................TAGGTACCAAGTTGGGCAGTAGTCT.......................................................................... 25 0 1 1.00 1 1

Anti-sense strand reads

CTGTCCTCGGGAGACAGGTGTCACTGGTGTTCCCACCGTCAGACGGCAGACGTTGTGAGACCCACGGGTGAAGATTGAGATGACGTACAGTCGACCTTAACCGGTTACCACACGACCATCGAAGACTCGTCGTACGATCCATGGTTCAACCCGTCATCAGAACAAGAACGACACCCACCCTCGACCCACCCCTGGTCACCCCTCCCGCCGGAAAGAGAAAAGTCCACGTCCCGAC

****************************************************.((((...(((((((....(((.(((((((...((((((((.....(((..((((((((((.(((...)))..))))))))))))).)).)))))))))))))....)))......))))))))))).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:32 AM