ID:

eca-mir-9044

 Coordinate:

chr1:71044120-71044264 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.4 -26.9 -26.7 -26.6

Sense Strand Reads

GCAGTTGGAGCCCATTGTCATCAAGTGCATTAATTAGAGCAGAAGGTTGGGGTGACTATGGGATGCATCCAGTAGAAGAGGCATTCCGGGAGGGGAGGATTTATTCCTAATCACAGCTGTCTTCATTGGATGATGGTTGTTGGGATATCTTTAATCCAGATGTTCTCCTTGGATATTGTCCTGTGGGAAATCCCATGAGTGAGAGAGTCTGGACAGCCTACTTATAAGCCAGGCTTGCTGAATAT

****************************************************........((((.((((((((.((((((((.......((.(((((......)))))..))...))).)))))))))))))..............))))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................................................TAATCACAGCTGTCTTCATTGGATGATG.............................................................................................................. 28 0 1 1.00 1 1
.......................................................................................................TTCCTAATCACAGCTGTCTTCATTGGATG................................................................................................................. 29 0 1 1.00 1 1
................................................................................................................................................................................................CCATGAGTGAGAGAGTCTGGACAGCC........................... 26 0 1 1.00 1 1
...................................................................TCCAGTAGAAGAGGCATTCCGGGAGGGGA..................................................................................................................................................... 29 0 1 1.00 1 1
..................................................................................................................................TGATGGTTGTTGGGATATCTTTAATCCAGA..................................................................................... 30 0 1 1.00 1 1
...............................................................................................................................................................................................CCCATGAGTGAGAGAGTCTGGACAGCC........................... 27 0 1 1.00 1 1

Anti-sense strand reads

CGTCAACCTCGGGTAACAGTAGTTCACGTAATTAATCTCGTCTTCCAACCCCACTGATACCCTACGTAGGTCATCTTCTCCGTAAGGCCCTCCCCTCCTAAATAAGGATTAGTGTCGACAGAAGTAACCTACTACCAACAACCCTATAGAAATTAGGTCTACAAGAGGAACCTATAACAGGACACCCTTTAGGGTACTCACTCTCTCAGACCTGTCGGATGAATATTCGGTCCGAACGACTTATA

***********************************************************************************************........((((.((((((((.((((((((.......((.(((((......)))))..))...))).)))))))))))))..............))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:31 AM