ID:

eca-mir-9033-2

 Coordinate:

chr25:35426557-35426693 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-69.7 -69.7 -69.7 -69.3
mature

  1. eca-mir-9033-1  chr25:35403533-35403562 +
  2. eca-mir-9033-2  chr25:35426580-35426609 +
star

Sense Strand Reads

ctgaggctggagaactcaccacatgagctggcctgtcccagggccggggcatggcccagctggggtcgcaacctaggtcaatctgaccccaaaggctgtgctTGCACAGGAGCCCAAGGAGGTGCCTCTGAGCCCAGCCTTGGAGGTGAGTCCACGGAGGATGGGTGGCGACAGGGAGGGACGCTGCAGGCAGGGGGCTCTGAGAGGGGCAAGGGCTTGGCGGGCTCCCTGAGGGAG

***********************************...((.((((...(((((.(((..((...(((((.(((((..((...((.(((((.(((((((.(((((...(((.(((......))).))).))))).))))))))).))).))......))...))))).))))).))..))).)).)))........)))).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.TGAGGCTGGAGAACTCACCACATGAGCTG............................................................................................................................................................................................................... 29 0 1 11.00 11 11
.TGAGGCTGGAGAACTCACCACATGAGCTGGC............................................................................................................................................................................................................. 31 0 1 5.00 5 5
.TGAGGCTGGAGAACTCACCACATGAGCTGGCC............................................................................................................................................................................................................ 32 0 1 4.00 4 4
.TGAGGCTGGAGAACTCACCACATGAGC................................................................................................................................................................................................................. 27 0 1 4.00 4 4
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGTGCTT...................................................................................................................................... 30 0 2 3.00 6 6
.TGAGGCTGGAGAACTCACCACATGAGT................................................................................................................................................................................................................. 27 1 1 3.00 3 3
..GAGGCTGGAGAACTCACCACATGAGCTGG.............................................................................................................................................................................................................. 29 0 1 3.00 3 3
.TGAGGCTGGAGAACTCACCACATGAGCTGGCCT........................................................................................................................................................................................................... 33 0 1 3.00 3 3
.TGAGGCTGGAGAACTCACCACATGAGCTA............................................................................................................................................................................................................... 29 1 1 2.00 2 2
.TGAGGCTGGAGAACTCACCACATGAGA................................................................................................................................................................................................................. 27 1 1 2.00 2 2
......CTGGAGAACTCACCACATGAGCTGGCC............................................................................................................................................................................................................ 27 0 1 2.00 2 2
..GAGGCTGGAGAACTCACCACATGAGCTG............................................................................................................................................................................................................... 28 0 1 2.00 2 2
.TGAGGCTGGAGAACTCACCACATGAGCT................................................................................................................................................................................................................ 28 0 1 1.00 1 1
..GAGGCTGGAGAACTCACCACATGAGCTGGCC............................................................................................................................................................................................................ 31 0 1 1.00 1 1
..........AGAACTCACCACATGAGCTGGCCTG.......................................................................................................................................................................................................... 25 0 1 1.00 1 1
.TGAGGCTGGAGAACTCACCACATGAGCTT............................................................................................................................................................................................................... 29 1 1 1.00 1 1
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGTGTT....................................................................................................................................... 29 1 2 1.00 2 2
.TGAGGCTGGAGAACTCACCACATGAGTT................................................................................................................................................................................................................ 28 1 1 1.00 1 1
.TGAGGCTGGAGGACTCACCACATGAGT................................................................................................................................................................................................................. 27 2 1 1.00 1 1
...AGGCTGGAGAACTCACCACATGAGCT................................................................................................................................................................................................................ 26 0 1 1.00 1 1
...AGGCTGGAGAACTCACCACATGAGCTG............................................................................................................................................................................................................... 27 0 1 1.00 1 1
.TGAGGCTGGAGAACTCACCACATGAGCTGGTT............................................................................................................................................................................................................ 32 2 1 1.00 1 1
.TGAGGCTGGAGAACTCACCACATGAGCAT............................................................................................................................................................................................................... 29 2 1 1.00 1 1
.......TGGAGAACTCACCACATGAGCTGGCC............................................................................................................................................................................................................ 26 0 1 1.00 1 1
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGTGCT....................................................................................................................................... 29 0 2 0.50 1 1
.................................................................................TCTGACCCCAAAGGCTGTGCTTACACAGG............................................................................................................................... 29 1 2 0.50 1 1
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGT.......................................................................................................................................... 26 0 2 0.50 1 1
.......................................................................................CCCAAAGGCTGTGCTTACACAGGAGCCCGAGT...................................................................................................................... 32 3 2 0.50 1 1

Anti-sense strand reads

GtgTggGtggTgTTGtGTGGTGTtgTgGtggGGtgtGGGTgggGGggggGTtggGGGTgGtggggtGgGTTGGtTggtGTTtGtgTGGGGTTTggGtgtgGtACGTGTCCTCGGGTTCCTCCACGGAGACTCGGGTCGGAACCTCCACTCAGGTGCCTCCTACCCACCGCTGTCCCTCCCTGCGACGTCCGTCCCCCGAGACTCTCCCCGTTCCCGAACCGCCCGAGGGACTCCCTC

***********************************...((.((((...(((((.(((..((...(((((.(((((..((...((.(((((.(((((((.(((((...(((.(((......))).))).))))).))))))))).))).))......))...))))).))))).))..))).)).)))........)))).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................CGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 26 2 2 1.00 2 2
...........................................................................................TTCCGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 29 2 2 1.00 2 2
.............................................................................................CCGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 27 2 2 1.00 2 2
.............................................CCCCGTACCGGGTCGACCCCAGCGTTGGAT.................................................................................................................................................................. 30 0 2 0.50 1 1
............................................................................................TCCGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 28 2 2 0.50 1 1

Generated: 09/01/2015 at 11:57 AM