ID:

eca-mir-9033-1

 Coordinate:

chr25:35403510-35403646 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-72.8 -72.8 -72.7
mature

  1. eca-mir-9033-1  chr25:35403533-35403562 +
  2. eca-mir-9033-2  chr25:35426580-35426609 +
star

Sense Strand Reads

tgaggcttgaagaagtcaccacatgagctggcctgtcccagggccggggcatggcccagctggggtcgcaacctaggtcaatctgaccccaaaggctgtgctTGCACAGGAGCCCAAGGAGGTGCCTCTGAGCCCAGCCTTGGAGGTGAGTCCACGGAGGTTGGGGGGCGACAGGGAGGGACACTGCAGGCAGGGGGCTCTGAGAGGGGCAAGGGCTTGGCGGGCTCCCTGAGGGAG

***********************************...(((((((.((((...))))...((((((((...............))))))))....((.(((((((..((...(((.......(((((((.((((...((.((((......)))).)).)))).))))))).......)))...))))))))).)))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGTGCTT...................................................................................................................................... 30 0 2 3.00 6 6
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGTGTT....................................................................................................................................... 29 1 2 1.00 2 2
.......................................................................................CCCAAAGGCTGTGCTTACACAGGAGCCCGAGT...................................................................................................................... 32 3 2 0.50 1 1
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGT.......................................................................................................................................... 26 0 2 0.50 1 1
.................................................................................TCTGACCCCAAAGGCTGTGCTTACACAGG............................................................................................................................... 29 1 2 0.50 1 1
.........................................................................TAGGTCAATCTGACCCCAAAGGCTGTGCT....................................................................................................................................... 29 0 2 0.50 1 1

Anti-sense strand reads

tgTggGttgTTgTTgtGTGGTGTtgTgGtggGGtgtGGGTgggGGggggGTtggGGGTgGtggggtGgGTTGGtTggtGTTtGtgTGGGGTTTggGtgtgGtACGTGTCCTCGGGTTCCTCCACGGAGACTCGGGTCGGAACCTCCACTCAGGTGCCTCCAACCCCCCGCTGTCCCTCCCTGTGACGTCCGTCCCCCGAGACTCTCCCCGTTCCCGAACCGCCCGAGGGACTCCCTC

***********************************...(((((((.((((...))))...((((((((...............))))))))....((.(((((((..((...(((.......(((((((.((((...((.((((......)))).)).)))).))))))).......)))...))))))))).)))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................................TTCCGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 29 2 2 1.00 2 2
..............................................................................................CGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 26 2 2 1.00 2 2
.............................................................................................CCGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 27 2 2 1.00 2 2
............................................................................................TCCGACACGAATGTGTCCTCGGGCTCCT..................................................................................................................... 28 2 2 0.50 1 1
.............................................CCCCGTACCGGGTCGACCCCAGCGTTGGAT.................................................................................................................................................................. 30 0 2 0.50 1 1

Generated: 09/01/2015 at 11:57 AM