ID:

eca-mir-9028

 Coordinate:

chr26:39658781-39658921 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-66.9 -66.9 -66.7

Sense Strand Reads

CTGTCCTTCTGACGGTTATTGAGCTCTGATTATCTCACCATTTATCCACCCAGGATCCTGGCTTCATGGCCCCAGGGATATAATGCAAGGCTCCAGCTGGTTAATTGCTTCCCCACCAGGAAGGATGTTTTGCCGGACTAGGCCCGCGTGCACGTCCCTGGGGATCAGCGTGGAGGAGCAGAGCCTGCAGCATCCACAAGGGCCAGGATGAAATCAGGCAGATGAATAAAACCTCCTGCTG

***********************************........((((.....)))).(((((((..(((((((((((((...((((..((((..(((((((.(((..(((((......)))))...)))..))))).)).)))).))))....)))))))))).)))..(((((...((((...))))....)))))..)))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........TGACGGTTATTGAGCTCTGATTATCTCACC.......................................................................................................................................................................................................... 30 0 1 4.00 4 4
..................................................................................................................................TGCCGGACTAGGCCCGCGTGCGTC....................................................................................... 24 3 1 2.00 2 2
................................................................................................................................................................................................TCCACAAGGGCCAGGATGAAATCAGGCAGA................... 30 0 1 2.00 2 2
......TTCTGACGGTTATTGAGCTCTGATTA................................................................................................................................................................................................................. 26 0 1 2.00 2 2
.........TGACGGTTATTGAGCTCTGATTATCT.............................................................................................................................................................................................................. 26 0 1 1.00 1 1
.......TCTGACGGTTATTGAGCTCTGATTATCTCATT.......................................................................................................................................................................................................... 32 2 1 1.00 1 1
.........TGACGGTTATTGAGCTCTGATTATCTCACT.......................................................................................................................................................................................................... 30 1 1 1.00 1 1
......................................................................................................................GGAAGGATGTTTTGCCGGACTAGGCCC................................................................................................ 27 0 1 1.00 1 1
...................................................................................................................CCAGGAAGGATGTTTTGCCGGACTAGGCC................................................................................................. 29 0 1 1.00 1 1
....................................................................................................................CAGGAAGGATGTTTTGCCGGACTAGGCCC................................................................................................ 29 0 1 1.00 1 1
...................................................................................................................CCAGGAAGGATGTTTTGCCGGACTAGGCCC................................................................................................ 30 0 1 1.00 1 1
............CGGTTATTGAGCTCTGATTATCTCACC.......................................................................................................................................................................................................... 27 0 1 1.00 1 1
..........................TGATTATCTCACCATTAATCCACCCAGGATT........................................................................................................................................................................................ 31 2 1 1.00 1 1
................................................................................................................................................................................................................TGAAATCAGGCAGATGAATAAAACC........ 25 0 1 1.00 1 1
..................TTGAGCTCTGATTATCTCACCATTTATCCACC............................................................................................................................................................................................... 32 0 1 1.00 1 1
.........TGACGGTTATTGAGCTCTGATTATCTC............................................................................................................................................................................................................. 27 0 1 1.00 1 1
................................................................................................................................TTTGCCGGACTAGGCCCGCGTGCGTC....................................................................................... 26 3 1 1.00 1 1
..........GACGGTTATTGAGCTCTGATTATCTCA............................................................................................................................................................................................................ 27 0 1 1.00 1 1
.......TCTGACGGTTATTGAGCTCTGATT.................................................................................................................................................................................................................. 24 0 1 1.00 1 1
................................................................................................................................TTTGCCGGACTAGGCCCGCGTGCGTCT...................................................................................... 27 3 1 1.00 1 1
.....................................................................................................................AGGAAGGATGTTTTGCCGGACTAGGCC................................................................................................. 27 0 1 1.00 1 1
....................................................................................................................CAGGAAGGATGTTTTGCCGGACTAGGCC................................................................................................. 28 0 1 1.00 1 1
.........TGACGGTTATTGAGCTCTGATTATCTCA............................................................................................................................................................................................................ 28 0 1 1.00 1 1

Anti-sense strand reads

GACAGGAAGACTGCCAATAACTCGAGACTAATAGAGTGGTAAATAGGTGGGTCCTAGGACCGAAGTACCGGGGTCCCTATATTACGTTCCGAGGTCGACCAATTAACGAAGGGGTGGTCCTTCCTACAAAACGGCCTGATCCGGGCGCACGTGCAGGGACCCCTAGTCGCACCTCCTCGTCTCGGACGTCGTAGGTGTTCCCGGTCCTACTTTAGTCCGTCTACTTATTTTGGAGGACGAC

***********************************........((((.....)))).(((((((..(((((((((((((...((((..((((..(((((((.(((..(((((......)))))...)))..))))).)).)))).))))....)))))))))).)))..(((((...((((...))))....)))))..)))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:58 AM