ID:

eca-mir-9023

 Coordinate:

chr26:39963492-39963612 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.8 -34.8 -34.8

Sense Strand Reads

GGTATTTTCTAGCAGCCTGCACGTTCTGACTTTCTACTGTTGATTCAGAAAAGCAGCTTTGTCCTGGACTTCAGCGAGCTTTGTATTAATACGGTAGGTAGTGTGGGTGTGAAATCACACTGCTGCTGGAATCGAGGTTGCTGAGCTGGAAGTGGGGCGAGGACGCGTTAGATAGGAGCCTTCAGCCCTGTCACACAGTCTAGAGCCCAAGCCGGGGCGTC

*********************************************************...(((((..((((((((.(((............((((((.((((((((........))))))))))))))...........)))..))).))))))))))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................TGTTGATTCAGAAAAGCAGCTTTGTCCT............................................................................................................................................................ 28 0 1 2.00 2 2
..................................................................................................................TCACACTGCTGCTGGAATCGAGGTTGCTG.............................................................................. 29 0 1 2.00 2 2
........................................................................AGCGAGCTTTGTATTAATACGGTAGGTAGT....................................................................................................................... 30 0 1 2.00 2 2
........................................................................................................................TGCTGCTGGAATCGAGGTTGCTGAGCT.......................................................................... 27 0 1 2.00 2 2
.................TGCACGTTCTGACTTTCTACTGTTGATTCA.............................................................................................................................................................................. 30 0 1 2.00 2 2
.................TGCACGTTCTGACTTTCTACTGTTGAT................................................................................................................................................................................. 27 0 1 2.00 2 2
.................................CTACTGTTGATTCAGAAAAGCAGCTTTGTCCT............................................................................................................................................................ 32 0 1 1.00 1 1
.......................................................................CAGCGAGCTTTGTATTAAT................................................................................................................................... 19 0 1 1.00 1 1
.....................................TGTTGATTCAGAAAAGCAGCTTTGTCC............................................................................................................................................................. 27 0 1 1.00 1 1
.........TAGCAGCCTGCACGTTCTGACTTTCTACTGTT.................................................................................................................................................................................... 32 0 1 1.00 1 1
...........................................................................................................................TGCTGGAGTCGAGGTTGCTGAGCT.......................................................................... 24 1 1 1.00 1 1
................................................................TGGACTTCAGCGAGCTTTGTATTAATAC................................................................................................................................. 28 0 1 1.00 1 1
..........................................................................................................................................TGCTGAGCTGGAAGTGGGGCGAGGACGC....................................................... 28 0 1 1.00 1 1
....TTTTCTAGCAGCCTGCACGTTCTGAC............................................................................................................................................................................................... 26 0 1 1.00 1 1
..................................................................................................................TCACACTGCTGCTGGAATCGAGGTTG................................................................................. 26 0 1 1.00 1 1
................................................................................TTGTATTAATACGGTAGGTAGTGGGT................................................................................................................... 26 2 1 1.00 1 1
........................................................................................................................TGCTGCTGGAATCGAGGTTGCTGAGA........................................................................... 26 1 1 1.00 1 1
..................................................................................................................TCACACTGCTGCTGGAATCGAGGTTGCTGT............................................................................. 30 1 1 1.00 1 1
.........TAGCAGCCTGCACGTTCTGACTTTCTACTGATA................................................................................................................................................................................... 33 2 1 1.00 1 1
.................TGCACGTTCTGACTTTCTACTGTTGATTCAG............................................................................................................................................................................. 31 0 1 1.00 1 1
.................TGCACGTTCTGACTTTCTACTGTTGATT................................................................................................................................................................................ 28 0 1 1.00 1 1
.................TGCACGTTCTGACTTTCTACTGTTG................................................................................................................................................................................... 25 0 1 1.00 1 1
.................................................................GGACTTCAGCGAGCTTTGTATTAATACGGTA............................................................................................................................. 31 0 1 1.00 1 1
...................................................................................................................................TCGAGGTTGCTGAGCTGGAAGTGGGGCG.............................................................. 28 0 1 1.00 1 1
.................TGCACGTTCTGACTTTCTACTGT..................................................................................................................................................................................... 23 0 1 1.00 1 1
.................TGCACGTTCTGACTTTCTACTGTTGATTCAGT............................................................................................................................................................................ 32 1 1 1.00 1 1
...........................................................................................................................TGCTGGAATCGAGGTTGCTGAGCT.......................................................................... 24 0 1 1.00 1 1
.....................CGTTCTGACTTTCTACTGT..................................................................................................................................................................................... 19 0 1 1.00 1 1
..................................TACTGTTGATTCAGAAAAGCAGCTTTGTCCT............................................................................................................................................................ 31 0 1 1.00 1 1
.................TGCACGTTCTGACTTTCTACTGTTGA.................................................................................................................................................................................. 26 0 1 1.00 1 1

Anti-sense strand reads

CCATAAAAGATCGTCGGACGTGCAAGACTGAAAGATGACAACTAAGTCTTTTCGTCGAAACAGGACCTGAAGTCGCTCGAAACATAATTATGCCATCCATCACACCCACACTTTAGTGTGACGACGACCTTAGCTCCAACGACTCGACCTTCACCCCGCTCCTGCGCAATCTATCCTCGGAAGTCGGGACAGTGTGTCAGATCTCGGGTTCGGCCCCGCAG

***************************************************************...(((((..((((((((.(((............((((((.((((((((........))))))))))))))...........)))..))).))))))))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................CGTGCAAGACTGAAAGATGACAACTAAGT.............................................................................................................................................................................. 29 0 1 7.00 7 7
...............................................................................................................................................................................CTCGGAAGTCGGGACAGTGTGTCAGAT................... 27 0 1 1.00 1 1
...........CGTCGGACGTGCAAGACTGAAAGATGACAACT.................................................................................................................................................................................. 32 0 1 1.00 1 1
..............CGGACGTGCAAGACTGAAAGATGACAACTA................................................................................................................................................................................. 30 0 1 1.00 1 1
.................ACGTGCAAGACTGAAAGATGACAACT.................................................................................................................................................................................. 26 0 1 1.00 1 1
...............................................................................................................................................................................CTCGGAAGTCGGGACAGTGTGTCAGATCT................. 29 0 1 1.00 1 1
..................GGTGCAAGACTGAAAGATGACAACTAAGT.............................................................................................................................................................................. 29 1 1 1.00 1 1
.............TCGGACGTGCAAGACTGAAAGATGACAACTA................................................................................................................................................................................. 31 0 1 1.00 1 1

Generated: 09/01/2015 at 11:57 AM