ID:

eca-mir-9021

 Coordinate:

chr28:45276597-45276709 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TTtTtTGggtGtgTgtgtttgTGtTGTTTtTgttgtGtggTTgtGTTGGGTggTggTTgtGTTTgTggtGttGgTGtGtGTGGGgtGggggTGGggTGgtGtGGTTtGtGTttggTGgTGggGtGtGTTGTTgtgTGTgTggTTgTGtgGTGTggTgGtGtgTGTgtGgtGttgTgtggtTGTtTgTGTgtGgTGTGggTGTTTtTgTTTgtT

***********************************...............................................................................................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................................GCTGCCGAGAGTTGTTCACTGT........................................................................... 22 0 1 62.00 62 62
.....................................................................................................................CTGCCGAGAGTTGTTCACTGT........................................................................... 21 0 1 39.00 39 39
....................................................................................................................GCTGCCGAGAGTTGTTCACTG............................................................................ 21 0 1 12.00 12 12
.....................................................................................................................CTGCCGAGAGTTGTTCACTGTT.......................................................................... 22 1 1 11.00 11 11
.....................................................................................................................CTGCCGAGAGTTGTTCACTGTAA......................................................................... 23 2 1 8.00 8 8
....................................................................................................................GCTGCCGAGAGTTGTTCACTGTA.......................................................................... 23 1 1 5.00 5 5
...................................................................................................................TGCTGCCGAGAGTTGTTCACTG............................................................................ 22 0 1 3.00 3 3
.....................................................................................................................CTGCCGAGAGTTGTTCACTGTA.......................................................................... 22 1 1 3.00 3 3
.....................................................................................................................CTGCCGAGAGTTGTTCACTGA........................................................................... 21 1 1 3.00 3 3
.....................................................................................................................CTGCCGAGAGTTGTTCACTGTAT......................................................................... 23 1 1 2.00 2 2
....................................................................................................................GCTGCCGAGAGTTGTTCACTGG........................................................................... 22 1 1 2.00 2 2
..................................................................................................................CTGCTGCCGAGAGTTGTTCACT............................................................................. 22 0 1 2.00 2 2
....................................................................................................................GCTGCCGAGAGTTGTTCACTGTAA......................................................................... 24 2 1 2.00 2 2
.....................................................................................................................CTGCCGAGAGTTGTTCACTGTTA......................................................................... 23 2 1 2.00 2 2
....................................................................................................................GCTGCCGAGAGTTGTTCACAG............................................................................ 21 1 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGTTGTTCACTGTAT......................................................................... 24 1 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGTTGTTCACTGA........................................................................... 22 1 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGTTGTTCACT............................................................................. 20 0 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGGTGTTCACTGT........................................................................... 22 1 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGTTGTTCACGGT........................................................................... 22 1 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGTTGTTCACTGTAG......................................................................... 24 2 1 1.00 1 1
....................................................................................................................GCTGCCGAGGGTTGTTCACGGT........................................................................... 22 2 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGTGGTTCACTG............................................................................ 21 1 1 1.00 1 1
..................................................................................................................CTGCTGCCGAGAGTTGTTCACTG............................................................................ 23 0 1 1.00 1 1
...................................................................................................................TGCTGCCGAGAGTTGTTCACTGTAT......................................................................... 25 1 1 1.00 1 1
.....................................................................................................................CTGCCGAGAGTTGTTCACTG............................................................................ 20 0 1 1.00 1 1
....................................................................................................................GCTGCCGAGGGTTGTTCACTGT........................................................................... 22 1 1 1.00 1 1
...................................................................................................................TGCTGCCGAGAGTTGTTCACTGT........................................................................... 23 0 1 1.00 1 1
....................................................................................................................GCTGCCGAGAGTTGTTCACTGAAA......................................................................... 24 3 2 0.50 1 1
....................................................................................................................GCTGCCGAGGGTTGTTCACAGT........................................................................... 22 2 2 0.50 1 1
....................................................................................................................GCTGCCGAGCGTTGTTCACGGT........................................................................... 22 2 2 0.50 1 1
...........................................................................................................................AGAGTTGTTCACTGT........................................................................... 15 0 12 0.08 1 1

Anti-sense strand reads

AAtAtACggtCtgAgtgtttgACtACAAAtAgttgtCtggAAgtCAACCCAggAggAAgtCAAAgAggtCttCgACtCtCACCCgtCggggACCggACgtCtCCAAtCtCAttggACgACggCtCtCAACAAgtgACAgAggAAgACtgCACAggAgCtCtgACAgtCgtCttgAgtggtACAtAgACAgtCgACACggACAAAtAgAAAgtA

***********************************...............................................................................................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:58 AM