ID:

eca-mir-9018

 Coordinate:

chr28:41770236-41770374 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-61.5 -61.4 -61.3
mature

  1. eca-mir-9018  chr28:41770276-41770297 -
  2. chr28:41770317-41770338 +
star

Sense Strand Reads

CCAGTATAGAGAATAAAAATAATGATCCCAGGTTGAGGAAAATTTGCAACATGTTAGTGAATTTTGGATGAAAATTTCATTCCGGATGAAAAATTAGTCGCAGAAAATGATTTTCTGACAATGAGTAATTTTCTGCGACTAATTTTTCATTCGGAATGACATCATCATTACACGAACTCACTTCCTCACTTTTTGTAAGAAAAGGGGGAGGCAGTGATCATGAGAACTGACTGGAGGAG

***********************************.......(((((((..((..(((((.((((((((((..((.((((((((((((((((((((((((((((((((....(((.......)))..)))))))))))))))))))))))))))))))).))..))))).)).))).)))))....))....))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................................................ATTTTCTGCGACTAATTTTTCA.......................................................................................... 22 0 2 0.50 1 1

Anti-sense strand reads

GGTCATATCTCTTATTTTTATTACTAGGGTCCAACTCCTTTTAAACGTTGTACAATCACTTAAAACCTACTTTTAAAGTAAGGCCTACTTTTTAATCAGCGTCTTTTACTAAAAGACTGTTACTCATTAAAAGACGCTGATTAAAAAGTAAGCCTTACTGTAGTAGTAATGTGCTTGAGTGAAGGAGTGAAAAACATTCTTTTCCCCCTCCGTCACTAGTACTCTTGACTGACCTCCTC

***********************************.......(((((((..((..(((((.((((((((((..((.((((((((((((((((((((((((((((((((....(((.......)))..)))))))))))))))))))))))))))))))).))..))))).)).))).)))))....))....))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................................................................................................................................................TCCGTCACTAGTACTCTTGACTGACCT.... 27 0 1 4.00 4 4
................................................................................................................................................................................................................TCCGTCACTAGTACTCTTGACTGACCTCCT. 30 0 1 3.00 3 3
................................................................................................................................................................................................................TCCGTCACGAGTACTCTTGACTGACCTCCT. 30 1 1 1.00 1 1
..............................................................................................................................................................................................................CCTCCGTCACTAGTACTCTTGACTGACCT.... 29 0 1 1.00 1 1
.............................................................................GTAAGGCCTACTTTTTAATCAGCGTCTTTT.................................................................................................................................... 30 0 1 1.00 1 1
................................................................................................................................................................................................................TCCGTCACTAGTACTCTTGAATGACCT.... 27 1 1 1.00 1 1
........................................................................................................................................................................................................TTTCCCCCTCCGTCACTAGTACTCTTGACT......... 30 0 1 1.00 1 1
............................................................................................................................................................................................................TCCCTCCGTCACTAGTACTCTTGACTGACCT.... 31 1 1 1.00 1 1
....................................................................................................................CTGTTACTCATTAAAAGACGCTGAT.................................................................................................. 25 0 1 1.00 1 1
......................................................................................ACTTTTTAATCAGCGTCTTTTA................................................................................................................................... 22 0 2 0.50 1 1

Generated: 09/01/2015 at 12:00 PM