ID:

eca-mir-9017

 Coordinate:

chr28:37868767-37868911 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.7 -44.4 -44.3 -44.1

Sense Strand Reads

AGCTGGCAGCATCACCTATGGTCACAAAGGGGCAACATCAGCAGGTTGCTGGGCAGGTAGCTGCGAGGGCAGAGGTAGGGAGAAGGGAGGCCACATACAAGTCTGGAGACACTGGGAGGGGGCTGGGTGGCAGGTGTGTTGGGATTGTCTGCTCTTCTTGGGTTTCCTGACTCGGAGGTCTGATGCCCACAGTCGGTGGCTCCCCTGGTAGGGGTACCTGTGGATGCAGTTTCTGGCAGAGCTCT

********************************************************************************((...(((.(((((..((.....(((((((.((((((((((((((((.((((((.((......))..))))))..)))..))))))))..)))))..)))).....)))..))..)))))))).))..************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................................................................................TCCTGACTCGGAGGTCTGATGCCCACAGT.................................................... 29 0 1 21.00 21 21
...................................................................................................................................................................TTCCTGACTCGGAGGTCTGATGCCCACAGT.................................................... 30 0 1 7.00 7 7
...............................................................................................TACAAGTCTGGAGACACTGGGAGG.............................................................................................................................. 24 0 1 4.00 4 4
...............................................................................................TACAAGTCTGGAGACACTGGGAGGGGGCT......................................................................................................................... 29 0 1 4.00 4 4
...........................................................................................................................................................TCTTGGGTTTCCTGACTCGGAGGTCT................................................................ 26 0 1 2.00 2 2
.......................................................................................................................................................................TGACTCGGAGGTCTGATGCCCACA...................................................... 24 0 1 2.00 2 2
......................................................................................................................................................................................................................TACCTGTGGATGCAGTTTCTGGCAGAGCTC. 30 0 1 2.00 2 2
...............................................................................................TACAAGTCTGGAGACACTGGGAGGGGGT.......................................................................................................................... 28 1 1 2.00 2 2
............................................................................................................................................................CTTGGGTTTCCTGACTCGGAGGTCT................................................................ 25 0 1 1.00 1 1
..........................................................................................................................................TTGGGATTGTCTGCTCTTCTTGGGTA................................................................................. 26 1 1 1.00 1 1
..........................................................................................................................................TTGGGATTGTCTGCTCTTCTTGGGAAT................................................................................ 27 2 1 1.00 1 1
..................................................................................................................................................................TTTCCTGACTCGGAGGTCTGATGCCCACAGT.................................................... 31 0 1 1.00 1 1
..................................................................................................................................................................TTTCCTGACACGGAGGTCTAATGCCCACAGT.................................................... 31 2 1 1.00 1 1
..................................................................................................................................CAGGTGTGTTGGGATTGTCTGCTCTTCT....................................................................................... 28 0 1 1.00 1 1
.............................................................................................................................................................................................CAGTCGGTGGCTCCCCTGGTAGGGGTACCT.......................... 30 0 1 1.00 1 1
.............................................................................................................................................................................................CAGTCGGTGGCTCCCCTGGTAGGGGTACC........................... 29 0 1 1.00 1 1
.................................................................................................................................................................................GTCTGATGCCCACAGTCGGTGGCTC........................................... 25 0 1 1.00 1 1
....................................................................................................................................................................TCCTGACTCGGAGGTCTGATGCCCACAGA.................................................... 29 1 1 1.00 1 1
..............................................................................................................................................................TGGGTTTCCTGACTCGGAGGTCTGATT............................................................ 27 1 1 1.00 1 1
...............................................................................................TACAAGTCTGGAGACACTGGGAGGGGGC.......................................................................................................................... 28 0 1 1.00 1 1
...............................................................................................TACAAGTCTGGAGACACTGGGAGGGTT........................................................................................................................... 27 2 1 1.00 1 1
....................................................................................................................................................................TCCTGAGTCGGAGGTCTGATGCCCACAGT.................................................... 29 1 1 1.00 1 1
........................................................................................................................................TGTTGGGATTGTCTGCTCTTCTTGGGT.................................................................................. 27 0 1 1.00 1 1
...............................................................................................TACAAGTCTGGAGACACTGGGAG............................................................................................................................... 23 0 1 1.00 1 1
....................................................................................................................................................................TCCTGACTCGGAGGTCTGAAGCCCACAGT.................................................... 29 1 1 1.00 1 1
................TATGGTCACAAAGGGGCAACATCAGCAGGT....................................................................................................................................................................................................... 30 0 1 1.00 1 1
.......................................................................................................................................................................TGACTCGGAGGTCTGATGCCCACAGTC................................................... 27 0 1 1.00 1 1
................................................................................................................................................TTGTCTGCTCTTCTTGGGTTTCCTGATA......................................................................... 28 2 1 1.00 1 1
..........................................................................................................................................TTGGGATTGTCTGCTCTTCTTGGGT.................................................................................. 25 0 1 1.00 1 1
................................................................................................................................................TTGTCTGCTCTTCTTGGGTTTCCTGACTCGT...................................................................... 31 1 1 1.00 1 1
...........................................................................................................................................................................TCGGAGGTCTGATGCCCACAGTCGGTGGCT............................................ 30 0 1 1.00 1 1
..........................................................................................................................................TTGGGATTGTCTGCTCTTCTTGGGTT................................................................................. 26 0 1 1.00 1 1
...............................................................................................TACAAGTCTGGAGACACTGGGAA............................................................................................................................... 23 1 1 1.00 1 1
..............................................................................................................................................GATTGTCTGCTCTTCTTGGGTTTCCTGACA......................................................................... 30 1 1 1.00 1 1
.....................................................................................................................................................TGCTCTTCTTGGGTTTCCTGACTCGGATT................................................................... 29 2 1 1.00 1 1
..........................................................................................................................................................TTCTTGGGTTTCCTGACTCGGAGGTC................................................................. 26 0 1 1.00 1 1
...........................................................................................................................................................................TCGGAGGTCTGATGCCCACAGTCGGTGGCTC........................................... 31 0 1 1.00 1 1
...............................................................................................TACAAGTCTGGAGACACTGGGAGGGGT........................................................................................................................... 27 1 1 1.00 1 1
..........................................................................................................................................TTGGGATTGTCTGCTCTTCTTGGG................................................................................... 24 0 1 1.00 1 1
.....................................................................................................TCTGGAGACACTGGGAGGGGGCTGGGC..................................................................................................................... 27 1 1 1.00 1 1
......................................................................................................................................................................................................................TACCTGTGGATGCAGTTTCTGGCAGAGCT.. 29 0 1 1.00 1 1
....................................................................................................................................................................TCCTGACTCGGAGGTCTGATGCCCAAT...................................................... 27 2 1 1.00 1 1
.........................................................................................................................................GTTGGGATTGTCTGCTCTTCTTGGGTT................................................................................. 27 0 1 1.00 1 1

Anti-sense strand reads

TCGACCGTCGTAGTGGATACCAGTGTTTCCCCGTTGTAGTCGTCCAACGACCCGTCCATCGACGCTCCCGTCTCCATCCCTCTTCCCTCCGGTGTATGTTCAGACCTCTGTGACCCTCCCCCGACCCACCGTCCACACAACCCTAACAGACGAGAAGAACCCAAAGGACTGAGCCTCCAGACTACGGGTGTCAGCCACCGAGGGGACCATCCCCATGGACACCTACGTCAAAGACCGTCTCGAGA

*************************************((...(((.(((((..((.....(((((((.((((((((((((((((.((((((.((......))..))))))..)))..))))))))..)))))..)))).....)))..))..)))))))).))..******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:58 AM