ID:

eca-mir-9016

 Coordinate:

chr9:82220055-82220199 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.5 -45.2 -45.2

Sense Strand Reads

CCGGGAGATGGCTCTGGCTTGTCCCCGTGGGCCTGGAAGGGCACTGTACAAACAAGGCAGAGAACAGGCCAGCCTGGGGCCTTGAGGAGCTAGTTAGAGTGCCTGTCAAGTGTGGGTCTAGGGGGAGCTGCTGGGCCTCTAAGTGTCTTCTCCCTAGAGCCTAGAGGCGCTGGTGTCCTGTGCATGCCACGGGGCGGAGGCTGCAGGCCCCTGACACACGGAGATGGCTGCTCCGCCAGGATGCC

******************************************************************.((((((((.((((((.((((((.((.((((((.(((((......((((.(((....))).))))))))))))))).)).))))))...)).))))...)).))))))............*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................GCCTTGAGGAGCTAGTTAGAGTGTT.............................................................................................................................................. 25 2 1 2.00 2 2
.....................TCCCCGTGGGCCTGGAAGGGCACTGTACT................................................................................................................................................................................................... 29 1 1 1.00 1 1
............................................TGTACAAACAAGGCAGAGAACAGGCCAGCCT.......................................................................................................................................................................... 31 0 1 1.00 1 1
..........................................................................................TAGTTAGAGTGCCTGTCAAGTGTGGGTCTT............................................................................................................................. 30 1 1 1.00 1 1
..............................................TACAAACAAGGCAGAGAACAGGCCAGC............................................................................................................................................................................ 27 0 1 1.00 1 1
...........................................................................................................................................TAAGTGTCTTCTCCCTAGAGCGTAGAGGCGCT.......................................................................... 32 1 1 1.00 1 1
....................................AAGGGCACTGTACAAACAAGGCAGAGT...................................................................................................................................................................................... 27 1 1 1.00 1 1
...........................................................................................................................................TAAGTGTCTTCTCCCTAGAGCCTAGAGGCGCT.......................................................................... 32 0 1 1.00 1 1
..............................................TACAAACAAGGCAGAGAACAGGCCAGCCTGT........................................................................................................................................................................ 31 1 1 1.00 1 1
.................................................................................TTGAGGAGCTAGTTAGAGTGCCTGTC.......................................................................................................................................... 26 0 1 1.00 1 1
..................................................................................TGAGGAGCTAGTTAGAGTGCCTGTC.......................................................................................................................................... 25 0 1 1.00 1 1
..................TTGTCCCCGTGGGCCTGGAAGGGCACT........................................................................................................................................................................................................ 27 0 1 1.00 1 1
...........................................................................................................................................TAAGTGTCTTCTCCCTAGAGCCTAGAGGC............................................................................. 29 0 1 1.00 1 1
..........................................................................................................................................CTAAGTGTCTTCTCCCTAGAGCCTAGAGG.............................................................................. 29 0 1 1.00 1 1
..............................................TACAAACAAGGCAGAGAACAGGCCAGCCTGG........................................................................................................................................................................ 31 0 1 1.00 1 1
...................TGTCCCCGTGGGCCTGGAAGGGCACTGTA..................................................................................................................................................................................................... 29 0 1 1.00 1 1

Anti-sense strand reads

GGCCCTCTACCGAGACCGAACAGGGGCACCCGGACCTTCCCGTGACATGTTTGTTCCGTCTCTTGTCCGGTCGGACCCCGGAACTCCTCGATCAATCTCACGGACAGTTCACACCCAGATCCCCCTCGACGACCCGGAGATTCACAGAAGAGGGATCTCGGATCTCCGCGACCACAGGACACGTACGGTGCCCCGCCTCCGACGTCCGGGGACTGTGTGCCTCTACCGACGAGGCGGTCCTACGG

***********************************************************.((((((((.((((((.((((((.((.((((((.(((((......((((.(((....))).))))))))))))))).)).))))))...)).))))...)).))))))............****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:10 PM