ID:

eca-mir-9014-1

 Coordinate:

chr8:5879610-5879748 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.2 -48.6 -48.6
mature

  1. eca-mir-9014-1  chr8:5879653-5879671 -
  2. eca-mir-9014-2  chr10:33519897-33519915 -
  3. chr14:43430912-43430930 +
  4. chr20:30248223-30248241 -
  5. chr23:5813845-5813863 +
  6. chr23:7964960-7964978 -
  7. chrX:77263544-77263562 -
star

Sense Strand Reads

AGGTTAGAGTTTGGTACTTTCCTTGAACCAGAGGCCCACTTGGGATTTTCCCGTGGTTTGGAGTGTGGTCAGGAGCCATAGGGAGGGATACCAATCCAGCCTTAGGAAAAGAAACCTGCCACAGGAGTCTTGGAGATTGGTGACCGTCCTAATGACTTAAGTGGTCAACCACTGCCCATGTAAAATTTATATATTAGAGATAGGATTAGGAAGGAATGGATTAATTCATTCTTCATCAC

***********************************((((..((((...))))))))..(((.(((((((((((..((.(((((..((((....))))..)))))))........))))((((..(((((((((.(((.((...))))))))).)))))..))))...))))).)))))..........................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................................................TCTTGGAGATTGGTGACCG............................................................................................. 19 0 7 0.14 1 1
........................................................................................................................................TTGGTGACCGTCCTAATGACTTAAGTGGT.......................................................................... 29 0 7 0.14 1 1
..................................................................................................................................TGGAGATTGGTGACCGTCC.......................................................................................... 19 0 8 0.13 1 1
.................................................................................................................................TTGGAGATTGGTGACCGTCC.......................................................................................... 20 0 8 0.13 1 1
..................................................................................................................................................................................TGTAAAATTTATATATTAGAGATAGGATT................................ 29 0 20 0.10 2 2
.........................................................................................................................................TGGTGACCGTCCTAATGACTTAAGTGT........................................................................... 27 1 11 0.09 1 1
.................................................................................................AGCCTTAGGAAAAGAAACCTGCCACAGGAGA............................................................................................................... 31 1 13 0.08 1 1
............................................................................................................................................................................TGCCCATGTAAAATTTATATATTAGAGATAGT................................... 32 1 18 0.06 1 1

Anti-sense strand reads

TCCAATCTCAAACCATGAAAGGAACTTGGTCTCCGGGTGAACCCTAAAAGGGCACCAAACCTCACACCAGTCCTCGGTATCCCTCCCTATGGTTAGGTCGGAATCCTTTTCTTTGGACGGTGTCCTCAGAACCTCTAACCACTGGCAGGATTACTGAATTCACCAGTTGGTGACGGGTACATTTTAAATATATAATCTCTATCCTAATCCTTCCTTACCTAATTAAGTAAGAAGTAGTG

***********************************((((..((((...))))))))..(((.(((((((((((..((.(((((..((((....))))..)))))))........))))((((..(((((((((.(((.((...))))))))).)))))..))))...))))).)))))..........................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
TCCAATCTCAAACCATGAAAGGAACT..................................................................................................................................................................................................................... 26 0 20 0.55 11 11
.......................................................................CCTCGGTATCCCTCCCTATGGTTAGGT............................................................................................................................................. 27 0 12 0.17 2 2
....................................................................AGTCCTCGGTTTCCCTCCCTATGGTTAGGT............................................................................................................................................. 30 1 9 0.11 1 1
....................................................................AGTCCTCGGTATCCCTCCCTATGGTTAGGT............................................................................................................................................. 30 0 9 0.11 1 1
....................................................CACCAAACCTCACACGCGTCCTCGGTAT............................................................................................................................................................... 28 2 11 0.09 1 1
.......................................................................ACTCGGTATCCCTCCCTATGGTTAGGT............................................................................................................................................. 27 1 12 0.08 1 1
TCCAATCTCAGAGCATGAAAGGAACTT.................................................................................................................................................................................................................... 27 2 20 0.05 1 1
.....................................................................................................................................TCTAACCTCTGGCAGGATTACTGAATT............................................................................... 27 1 20 0.05 1 1
.CCAATCTCAAACCTTGAAAGGAACTT.................................................................................................................................................................................................................... 26 1 20 0.05 1 1
TCCAATCTCAAACCATGAAAGGAACTTGC.................................................................................................................................................................................................................. 29 1 20 0.05 1 1
TCCAATCTCAAAGCATGAAAGGAACTT.................................................................................................................................................................................................................... 27 1 20 0.05 1 1
.CCAATCTCAGACCATGAAAGGAACTT.................................................................................................................................................................................................................... 26 1 20 0.05 1 1
.CCAATCTCAAACCCTGAAAGGAACTT.................................................................................................................................................................................................................... 26 1 20 0.05 1 1

Generated: 09/01/2015 at 12:09 PM