ID:

eca-mir-9013

 Coordinate:

chr8:28438717-28438861 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AACACTTGTCTGAAGGCAGAATGTCTCTTATCTACTGCGATGTTTGTTACAAGAGTGGCAGAGAGTGAGGGtGgTGGggGGTGGgGTtGTGGTTttGTTtGgGgtgTgTGgTTTGGgtGggTGGGGTTgtgtGGTTgtttTgtgtGGTGTtGtggTtGgtgTGgTgtTgttGGgtTGgTtTGGTGgTGTgggtgtTtGttTtGtGGttGtTGGGgtgtGtgGTTtGgtgtgTGtgttTGTTggTg

******************************************************************************...................................................................................................******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCT........................................................................................................................... 29 0 1 9.00 9 9
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTGG......................................................................................................................... 31 0 1 6.00 6 6
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCC............................................................................................................................ 28 0 3 5.67 17 17
......................................................................................................................................TTCAAATCACAGGTGTAGACCTAGCACT................................................................................... 28 0 1 3.00 3 3
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTGGGGTT..................................................................................................................... 35 0 1 2.00 2 2
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTGGG........................................................................................................................ 32 0 1 2.00 2 2
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTGGT........................................................................................................................ 32 1 1 2.00 2 2
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCA............................................................................................................................... 25 0 3 1.67 5 5
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTGGGGT...................................................................................................................... 34 0 1 1.00 1 1
.............................................................................................TAAGTTAGCCCACTCTGCTATGGCAGCCTGGGGTT..................................................................................................................... 35 2 1 1.00 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTATGGCAGCCTGG......................................................................................................................... 31 1 1 1.00 1 1
.................................................................................................TTAGCGCACTCTGCTTTGGCAGCCTGGGGTTCAAA................................................................................................................. 35 1 1 1.00 1 1
..................................................................................................................................CAGGTTCAAATCACAGGTGTAGACC.......................................................................................... 25 0 1 1.00 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGC............................................................................................................................. 27 0 3 1.00 3 3
..................................................................................................................................CAGGTTCAAATCACAGGTGTAGACCTAGCACT................................................................................... 32 0 1 1.00 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTGGGG....................................................................................................................... 33 0 1 1.00 1 1
.................................................................................................TTAGCGCACTCTGCTTTGGCAGCCT........................................................................................................................... 25 0 1 1.00 1 1
..............................................................................................AAGTTAGCGCACTCTGCTTTGGCAGCCTGGGA....................................................................................................................... 32 1 1 1.00 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCA........................................................................................................................... 29 1 5 0.60 3 3
............................................................................................TTAAGTTAGCGCACTCTGCTTTGGCAGC............................................................................................................................. 28 0 2 0.50 1 1
..................................................................................................TAGCGCACTCTGCTTTGGCCGCCTGGGGTT..................................................................................................................... 30 1 2 0.50 1 1
...................................................................................................AGCGCACTCTGCTTTGGCAGCCTGGG........................................................................................................................ 26 0 2 0.50 1 1
...............................................................................................AGTTAGCGCACTCTGCTTTGGCAGCCTGT......................................................................................................................... 29 1 2 0.50 1 1
............................................................................................TTAAGTTAGCGCACTCTGCTTTGGCATA............................................................................................................................. 28 2 5 0.40 2 2
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGGAGCC............................................................................................................................ 28 1 3 0.33 1 1
...........................................................................................GTTAAGTTAGCGCACTCTGCTTTGGCAGCCA........................................................................................................................... 31 1 4 0.25 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCATA............................................................................................................................. 27 2 6 0.17 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTGAA........................................................................................................................ 32 2 7 0.14 1 1
.............................................................................................TAAGTTAGCGCAGTCTGCTTTGGCA............................................................................................................................... 25 1 7 0.14 1 1
............................................................................................TTAAGTTAGCGCACTCTGCTTTGGCAGCCCGGGGT...................................................................................................................... 35 1 7 0.14 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTA.......................................................................................................................... 30 1 7 0.14 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCATT............................................................................................................................. 27 2 8 0.13 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTGTGGCA............................................................................................................................... 25 1 10 0.10 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCGGCCTG.......................................................................................................................... 30 1 11 0.09 1 1
.............................................................................................TAAGTTAGCGCACTCTGCTTTGGCAGCCTAAGA....................................................................................................................... 33 3 17 0.06 1 1

Anti-sense strand reads

TTGTGAACAGACTTCCGTCTTACAGAGAATAGATGACGCTACAAACAATGTTCTCACCGTCTCTCACTCCCtCgACCggCCACCgCAtCACCAAttCAAtCgCgtgAgACgAAACCgtCggACCCCAAgtgtCCAAgtttAgtgtCCACAtCtggAtCgtgACgAgtAgttCCgtACgAtACCACgACAgggtgtAtCttAtCtCCttCtACCCgtgtCtgCAAtCgtgtgACtgttACAAggAg

********************************************************************...................................................................................................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................................................................CCCCAAGTGTCCAAGTTT......................................................................................................... 18 0 20 0.05 1 1

Generated: 09/01/2015 at 12:08 PM