ID:

eca-mir-9012

 Coordinate:

chr8:13963340-13963484 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.3 -29.1 -29.1

Sense Strand Reads

TTTAGAAAAAGTGAATAGCTTCCTGTCATTGTGGTGCCGGGCTCTTGGCAGAGCAGCTCTGCCTGCCTGGCCAGTTCTTGGTGGGAAAGGACCCTTGTCTGTGTCGGCCCAGCGCCTCCCACTGAGTCCCTGGGTCTCTGATGCAGCACCAGGCACCTTGGAATGTGGGGAGCGGGTGCCCGGGGCTGCTGGACGGCAGGCAGCCTTGGACCACTGACAGAACTGTTTTAGCAGCATGAGGGTTT

*******************************************************************************.......((((..(((.((((((((((((((((...(((.....)))...)))))))...))))))).)).)))..))))......******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTTAGCAGC.......... 30 0 1 61.00 61 61
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTTAGC............. 27 0 1 10.00 10 10
..............................................................................................................................................................................................................TGGACCACTGACAGAACTGTTTTAGCAGC.......... 29 0 1 10.00 10 10
..........................................................................................................................TGAGTCCCTGGGTCTCTGATGCAGCACC............................................................................................... 28 0 1 4.00 4 4
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTTAG.............. 26 0 1 4.00 4 4
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTTAGCAG........... 29 0 1 3.00 3 3
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTTAGCA............ 28 0 1 2.00 2 2
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTTAGCAGCA......... 31 0 1 2.00 2 2
..............................................................................................................................................................................................................TGGACCACTGACAGAACTGTTTTAGCAGT.......... 29 1 1 2.00 2 2
...............TAGCTTCCTGTCATTGTGGTGCCGGGCTC......................................................................................................................................................................................................... 29 0 1 2.00 2 2
..............................................................................................................................................................................................................TGGACCACTGACAGAACTGTTTTAGCA............ 27 0 1 2.00 2 2
..............................................................................................TTGTCTGTGTCGGCCCAGCGCCT................................................................................................................................ 23 0 1 1.00 1 1
..................................TGCCGGGCTCTTGGCAGAGCAGCTCTGCCTT.................................................................................................................................................................................... 31 1 1 1.00 1 1
..........................................................................................................................................................................................TGCTGGACGGCAGGCAGCCTTGGA................................... 24 0 1 1.00 1 1
..........................................................................................................................TGAGTCCCTGGGTCTCTGAAGCAGCACC............................................................................................... 28 1 1 1.00 1 1
...............TAGCTTCCTGTCATTGTGGTGCCT.............................................................................................................................................................................................................. 24 1 1 1.00 1 1
.............................................................................................................................................................................................TGGACGGCAGGCAGCCTTGGACCACTGTT........................... 29 2 1 1.00 1 1
..............................................................................................................................................................................................................TGGACCGCTGACAGAACTGTTTTAGCAGC.......... 29 1 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACCACTGACAGAGCTGTTTTAGCAGC.......... 30 1 1 1.00 1 1
....................................................................................................................TCCCACTGAGTCCCTGGGTCTCTGATGCATT.................................................................................................. 31 2 1 1.00 1 1
.............................................................................................................................................................................................TGGACGGCAGGCAGCCTTGGACCACTGA............................ 28 0 1 1.00 1 1
..............................................................................................................................................................................................................TGGACCACTGACAGAACTGTTTTAGCAGCATG....... 32 0 1 1.00 1 1
..TAGAAAAAGTGAATAGCTTCCTGTC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACGACTGACAGAACTGTTTTAGCAGC.......... 30 1 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACCACTGACAGATCTGTTTTAGCAGC.......... 30 1 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACGACGGACAGAACTGTTTTAGCAGC.......... 30 2 1 1.00 1 1
..................................................................................................................................TGGGTCTCTGATGCAGCACC............................................................................................... 20 0 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACCACGGACAGAACTATTTTAGCAGC.......... 30 2 1 1.00 1 1
..TAGAAAAAGTGAATAGCTTCCTGTCATTGT..................................................................................................................................................................................................................... 30 0 1 1.00 1 1
..........................................................................................CCCCTTGTCTGTGTCGGCCCAGCGCCTC............................................................................................................................... 28 1 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACCACTGACAGAGCTGTTTTAGT............. 27 2 1 1.00 1 1
........................................................................................................................................TCTGATGCAGCACCAGGCACCTTGGA................................................................................... 26 0 1 1.00 1 1
........................................................................................................................................................................................................CAGCCTTGGACCACTGACAGAACTGAAT................. 28 2 1 1.00 1 1
........................................................................................................................................TCTGATGCAGCACCAGGCACCTTGGAAT................................................................................. 28 0 1 1.00 1 1
.......................................................................................................................................................................................................GCAGCCTTGGACCACTGACAGAACTGT................... 27 0 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTTAGCAGT.......... 30 1 1 1.00 1 1
..............................................................................................................................................................................................................TGGACCACTGACAGAACTGTTTTAGC............. 26 0 1 1.00 1 1
..........................................................................................................................TGAGTCCCTGGGTCTCTGATGGAGCACC............................................................................................... 28 1 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTATTTTAGCAGC.......... 30 1 1 1.00 1 1
..........................................................................................................................................................................................TGCTGGACGGCAGGCAGCCTTGGAC.................................. 25 0 1 1.00 1 1
..............................................................................................................................................................................................................TGGACCACTGACAGAACTGTTTTAGCAGCA......... 30 0 1 1.00 1 1
.................................................................................................................................................................................................................ACCACTGACAGAACTGTTTTAGCAGCATGAG..... 31 0 1 1.00 1 1
.............................................................................................................................................................................................TGGACGGCAGGCAGCCTTGGACCACTGAC........................... 29 0 1 1.00 1 1
..........................................................................................ACCCTTGTCTGTGTCGGCCCAGCGCCTC............................................................................................................................... 28 0 1 1.00 1 1
..................................................................................................................................TGGGTCTCTGATGCAGCACCAGGCACCTA...................................................................................... 29 1 1 1.00 1 1
...........................................................................................................................................................................................................CCTTGGACCACTGACAGAACTGTT.................. 24 0 1 1.00 1 1
..............................................................................................................................................................................................................TGGACCACTGACAGAACTGTTTTAGCAGCATT....... 32 1 1 1.00 1 1
...........................................................................................................................................................................................................CCTTGGACCACTGACAGAACTGTGTTAGCA............ 30 1 1 1.00 1 1
.............................................................................................................................................................................................................TTGGACCACTGACAGAACTGTTTT................ 24 0 1 1.00 1 1

Anti-sense strand reads

AAATCTTTTTCACTTATCGAAGGACAGTAACACCACGGCCCGAGAACCGTCTCGTCGAGACGGACGGACCGGTCAAGAACCACCCTTTCCTGGGAACAGACACAGCCGGGTCGCGGAGGGTGACTCAGGGACCCAGAGACTACGTCGTGGTCCGTGGAACCTTACACCCCTCGCCCACGGGCCCCGACGACCTGCCGTCCGTCGGAACCTGGTGACTGTCTTGACAAAATCGTCGTACTCCCAAA

********************************************************************************.......((((..(((.((((((((((((((((...(((.....)))...)))))))...))))))).)).)))..))))......******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:08 PM