ID:

eca-mir-9008

 Coordinate:

chr8:710555-710679 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.1 -32.0 -32.0

Sense Strand Reads

CTCATGTGCACATGCGATGCTGGTGTGTGCCGCGCCTTCCTGCCGTGTAGGTGAGGACCAGGCAGCCCTGTACTGTCCCCTGCCAGCTGTCAGAAGACCCGAGTGCTGTGCGGCTCTAGGGCATTCTCGATGCTACTGACCCGCGGCTGGGCTGGGCTTGCAGGAACTCTGGAAGAGGCTGATAGTGCGCCGCTCCCCTGCGGCCCCCAGGAAGGAAGCCTGGGG

*****************************************************************...........(((...(((((((((((.((...((((((((.((......)).))))..))))...)).)))))....))))))...))).....**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................TGCCAGCTGTCAGAAGACCCGAGTGT....................................................................................................................... 26 1 1 4.00 4 4
..............................................................................................................................TCGATGCTACTGACCCGCGGCTGGGCTGGGT.................................................................... 31 1 1 3.00 3 3
....................................................................................................................TAGGGCATTCTCGATGCTACTGACCCGCGG............................................................................... 30 0 1 2.00 2 2
................................................................................TGCCAGCTGTCAGAAGACCCGAGT......................................................................................................................... 24 0 1 2.00 2 2
.........................................................................................TCAGAAGACCCGAGTGCTGTGCGGCTC............................................................................................................. 27 0 1 1.00 1 1
................................................................................TGCCAGCTGTCAGAAGACCCGGGTA........................................................................................................................ 25 2 1 1.00 1 1
................................................................................TGCCAGCTGTCAGAAGACCCGAGTT........................................................................................................................ 25 1 1 1.00 1 1
.....................................................................................................................CGGGCATTCTCGATGCTACTGACCCGCGG............................................................................... 29 1 1 1.00 1 1
.............................................................................................................................CTCGATGCTACTGACCCGCGGCTGGGCTGG...................................................................... 30 0 1 1.00 1 1
................................................................................TGCCAGCTGTCAGAAGACCCGAGTA........................................................................................................................ 25 1 1 1.00 1 1
.......................................................................................TGTCAGAAGACCCGAGTGCTGTGCGGCTC............................................................................................................. 29 0 1 1.00 1 1
...........................................................................................................................TTCTCGATGCTACTGACCCGCGGCTGGGCA........................................................................ 30 1 1 1.00 1 1
......................................................................................CTGTCAGAAGACCCGAGTGCTGTGCGGCTC............................................................................................................. 30 0 1 1.00 1 1

Anti-sense strand reads

GAGTACACGTGTACGCTACGACCACACACGGCGCGGAAGGACGGCACATCCACTCCTGGTCCGTCGGGACATGACAGGGGACGGTCGACAGTCTTCTGGGCTCACGACACGCCGAGATCCCGTAAGAGCTACGATGACTGGGCGCCGACCCGACCCGAACGTCCTTGAGACCTTCTCCGACTATCACGCGGCGAGGGGACGCCGGGGGTCCTTCCTTCGGACCCC

****************************************************************...........(((...(((((((((((.((...((((((((.((......)).))))..))))...)).)))))....))))))...))).....***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:08 PM