ID:

eca-mir-9005

 Coordinate:

chr8:13095969-13096103 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.3 -32.0 -31.9
mature

  1. chr8:11152703-11152729 +
  2. eca-mir-9005  chr8:13096047-13096073 +
  3. chr8:13125025-13125051 -
  4. chrUn:33050205-33050231 -
  5. chrUn:58109955-58109981 -
star

Sense Strand Reads

AGGCCTGGGCCAAGCCGGGTCCAGGCGAGGGGGTGGCAGGAAGGCCTCTGCCTGCCCGGCTCTCTGAGCACTTCCCTGGAGTCTGTGCAAACATGAGAACAGGAACGAAAGCAGTCTCGTTCCCGTGTTTGTGGGATGAAGGCAGGAGCCCAGAGGCGAGAAGAGGCTGGGGCAGCAAAAGCCCCAGATGAAGCCTAGCCCACTGGGCCTCCCTGGGGCACCCGCTCTGCGGCCA

**********************************************************************....((((...(((((....))).))...))))........(((((((.(((.(((.((((.((..((....))....)))))).))).)))))))))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAG................................................................................ 27 0 5 1.20 6 6
.....................................................................................TGCAAACATGAGAACAGGAACGAAAGC........................................................................................................................... 27 0 1 1.00 1 1
......................................................................CTTCCCTGGAGTCTGTGCAAACATGAGAACA...................................................................................................................................... 31 0 1 1.00 1 1
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAGG............................................................................... 28 0 5 0.80 4 4
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAGT............................................................................... 28 1 5 0.80 4 4
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAGA............................................................................... 28 1 5 0.80 4 4
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGCC..................................................................................... 25 0 5 0.80 4 4
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGCCCAGA................................................................................. 29 0 5 0.60 3 3
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGCCCAGAGG............................................................................... 31 0 5 0.40 2 2
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAGAA.............................................................................. 29 2 5 0.40 2 2
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAGGA.............................................................................. 29 1 5 0.40 2 2
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAGAG.............................................................................. 29 2 5 0.20 1 1
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGCCCAGAG................................................................................ 30 0 5 0.20 1 1
...............................................................................................................................TTTGTGGGATGAAGGCAGGAGCCCAGAGA............................................................................... 29 1 5 0.20 1 1
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGCCCA................................................................................... 27 0 5 0.20 1 1
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGCCCAGAGA............................................................................... 31 1 5 0.20 1 1
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGC...................................................................................... 24 0 5 0.20 1 1
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAA................................................................................ 27 1 5 0.20 1 1
.................................................................................................................................TGTGGGATGAAGGCAGGAGCCCAGAGT............................................................................... 27 1 5 0.20 1 1
................................................................................................................................TTGTGGGATGAAGGGAGGAGCCCAGAGA............................................................................... 28 2 5 0.20 1 1
...............................................................................................................................CTTGTGGGATGAAGGCAGGAGCCCAGAA................................................................................ 28 2 5 0.20 1 1
..............................................................................................................................TGTTGTGGGATGAAGGCAGGAGCC..................................................................................... 24 2 5 0.20 1 1
................................................................................................................................TTGTGGGATGAGGGCAGGAGCCCAGAGA............................................................................... 28 2 5 0.20 1 1
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGGGCCCAGAGG............................................................................... 31 1 5 0.20 1 1
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAAT............................................................................... 28 2 5 0.20 1 1
...............................................................................................................................TTTGTGGGATGAAGGCAGGAGCCCAGAGG............................................................................... 29 0 5 0.20 1 1
................................................................................................................................TTGTGGGACGAAGGCAGGAGCCCAGAA................................................................................ 27 2 5 0.20 1 1
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAATA.............................................................................. 29 3 5 0.20 1 1
................................................................................................................................TTGTGGGATGAAGGCAGGAGCCCAGAGTA.............................................................................. 29 2 5 0.20 1 1
.............................................................................................................................TGTTTGTGGGATGAAGGCAGGAGCT..................................................................................... 25 1 7 0.14 1 1

Anti-sense strand reads

TCCGGACCCGGTTCGGCCCAGGTCCGCTCCCCCACCGTCCTTCCGGAGACGGACGGGCCGAGAGACTCGTGAAGGGACCTCAGACACGTTTGTACTCTTGTCCTTGCTTTCGTCAGAGCAAGGGCACAAACACCCTACTTCCGTCCTCGGGTCTCCGCTCTTCTCCGACCCCGTCGTTTTCGGGGTCTACTTCGGATCGGGTGACCCGGAGGGACCCCGTGGGCGAGACGCCGGT

*****************************************************************....((((...(((((....))).))...))))........(((((((.(((.(((.((((.((..((....))....)))))).))).)))))))))).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:09 PM