ID:

eca-mir-9004

 Coordinate:

chr8:33967964-33968082 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

star

  1. chr1:157134632-157134653 +
  2. chr4:36740753-36740774 +
  3. eca-mir-9004  chr8:33967997-33968018 -

Sense Strand Reads

CTGTGATAGCAATTGCAGATTTTACTAGATACAGTTTCTTTCTTtTTTtTTTtTTTtTTTtTTTtGTGtGGttGtTTGGgtgtGTGTTtGgTgtGTGtgtGTTTTGTGtGGttGtTTGTgtgTGtGgTttgtgTGTGggtGTgTTggTgTtTTTTGTtTGTGGGtTGggTggtgtGgtTGGgTGtTGttTGGtGTtGGTgTGgtgggtGGtTggtttgg

*****************************************************************......................................................................................******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................ACAGTGTTAGCTCAGTGACAGT..................................................................................................................... 22 0 1 1.00 1 1
..................................................................................................................ATTGTCACTGAGCTAACACTGT................................................................................... 22 0 3 0.33 1 1
...............................................................TAGTGAGGAAGATTGGCAC......................................................................................................................................... 19 0 6 0.17 1 1
..................................................................................................................................................................................TGGCTGATGAATGGAGTAGGTCTGCACC............. 28 0 14 0.14 2 2
.........................................................................................................................................................................................TGAATGGAGTAGGTCTGCACCCAGGAT....... 27 0 13 0.08 1 1
......................................................................................................................................................................................TGATGAACGGAGTAGGTCTGCACCCAAGATA...... 31 3 15 0.07 1 1
...................................................................................................................................................................................GGCTGATGAATGGAGTAGGTCTGCACCTATA......... 31 3 20 0.05 1 1
.........................................................................................................................................................................................TGAATGGAGTAGGTCTGCACC............. 21 0 20 0.05 1 1

Anti-sense strand reads

GACACTATCGTTAACGTCTAAAATGATCTATGTCAAAGAAAGAAtAAAtAAAtAAAtAAAtAAAtCACtCCttCtAACCgtgtCACAAtCgAgtCACtgtCAAAACACtCCttCtAACAgtgACtCgAttgtgACACggtCAgAAggAgAtAAAACAtACACCCtACggAggtgtCgtACCgACtACttACCtCAtCCAgACgtgggtCCtAggtttgg

********************************************************************......................................................................................***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................................TGACACGGTCAGAAGGAGATAAAACATACAC......................................................... 31 0 20 1.20 24 24
....................................................................................................................................GACACGGTCAGAAGGAGATAAAACATACAC......................................................... 30 0 20 0.95 19 19
...................................................................................................................................TGACACGGTCAGAAGGAGATAAAACATA............................................................ 28 0 20 0.75 15 15
...................................................................................................................................TGACACGGTCAGAAGGAGATAAAACATACA.......................................................... 30 0 20 0.70 14 14
...................................................................................................................................TGACACGGTCAGAAGGAGATAAAACAT............................................................. 27 0 20 0.40 8 8
.................................................................................................................................TATGACACTGTCAGAAGGAGATAAAACATA............................................................ 30 2 9 0.11 1 1
...................................................................................................................................TGACACGGTCAGAAGGAGATAAAACATACACC........................................................ 32 0 20 0.05 1 1
...................................................................................................................................TGACACGGTCAGAAGGAGATAAAACATAC........................................................... 29 0 20 0.05 1 1
........................................................................................................ACACTCCTTCTAACAGTGACTCGATTGT....................................................................................... 28 0 20 0.05 1 1
...................................................................................................................................TGACACGGTCAGAAGGAGATAAA................................................................. 23 0 20 0.05 1 1
...................................................................................................................................TGACACGGTCAGAAGGAGAT.................................................................... 20 0 20 0.05 1 1
...............................................................................................................................................................................................CTCATCCAGACGTGGGTCCTAGGTTT.. 26 0 20 0.05 1 1

Generated: 09/01/2015 at 12:10 PM