ID:

eca-mir-9002-1

 Coordinate:

chr8:28633680-28633794 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.5 -52.5 -52.2 -52.2
mature

  1. chr8:28438198-28438225 -
  2. eca-mir-9002-1  chr8:28633745-28633772 +
  3. eca-mir-9002-2  chr8:28783992-28784019 -
star

Sense Strand Reads

CTGAAGCGCCCGGTGAGGCTCCAGCAGCTGGTCAGGAGCTGGCGAGGAGGAGCCCCAGCTCAGCCTGCTGAGCCATGGAGAGGAGTCTCGTTTCCATCAGTTCTTCTCGGGCCTCTGAGCTTGGAGTGAGATGAGATCTGCCCTGGATCCAGTAGCCTGGGCCCTTGCCTCACACGGACACGGGAAGGAAACAAATGCCCACGACCAGCTTTTAT

***********************************....((.....((((.......((((((.(((((((.(((.((...(((.(((((((....(((.(((..(((((....)))))...))).))))))))))))).)).))).)).))))).)))))).....)))).......))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................TGAGCTTGGAGTGAGATGAGATCTGCCC........................................................................ 28 0 3 2.33 7 7
.........................................................................................................................................................................TCACACGGACACGAGAAGGAAACAAATG.................. 28 1 2 1.00 2 2
...................................................................................................................TGAGCTTGGAGTGAGATGAGATCTGAA......................................................................... 27 2 3 0.67 2 2
...................................................................................................................TGAGCTTGGAGTGAGATGAGATCTGCCT........................................................................ 28 1 3 0.67 2 2
..........................................................................................................................................................................CACACGGACACGAGAAGGAAACAAATGCC................ 29 1 2 0.50 1 1
........................................................................................................................................................TAGCCTGGGCCCTTGCCTCACACGGACACG................................. 30 0 2 0.50 1 1
...........................................................................................TTCCATCAGTTCTTCTCGGGCCTCTGT................................................................................................. 27 1 3 0.33 1 1
...........................................................................................TTCCATCAGTTCTTCTCGGGCCTCTGAGCTTT............................................................................................ 32 1 3 0.33 1 1
..........................................................................................TTTCCATCAGTTCTTCTCGGGCCTCTGAG................................................................................................ 29 0 3 0.33 1 1
...................................................................................................................TGAGCTTGGAGTGAGATGAGATCTGCT......................................................................... 27 1 3 0.33 1 1
...................................................................................................................TGAGCTTGGAGTGAGATGAGATCTGCCCT....................................................................... 29 0 3 0.33 1 1
...................................................................................................................TGAGCTTGGAGTGAGATGAGATCCGCCT........................................................................ 28 2 3 0.33 1 1
...........................................................................................TTCCATCAGTTCTTCTCGGGCC...................................................................................................... 22 0 3 0.33 1 1
................................................................................................TCAGTTCTTCTCGGGCCTCTGAGCTTGGAGT........................................................................................ 31 0 3 0.33 1 1
...................................................................................................................TGAGCTTGGAGTGAGATGAGATCTGC.......................................................................... 26 0 3 0.33 1 1

Anti-sense strand reads

GACTTCGCGGGCCACTCCGAGGTCGTCGACCAGTCCTCGACCGCTCCTCCTCGGGGTCGAGTCGGACGACTCGGTACCTCTCCTCAGAGCAAAGGTAGTCAAGAAGAGCCCGGAGACTCGAACCTCACTCTACTCTAGACGGGACCTAGGTCATCGGACCCGGGAACGGAGTGTGCCTGTGCCCTTCCTTTGTTTACGGGTGCTGGTCGAAAATA

***********************************....((.....((((.......((((((.(((((((.(((.((...(((.(((((((....(((.(((..(((((....)))))...))).))))))))))))).)).))).)).))))).)))))).....)))).......))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:10 PM