ID:

eca-mir-8997

 Coordinate:

chr7:44761714-44761852 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.2 -32.8 -32.4 -32.2

Sense Strand Reads

TTCCCTGGCGGCTGCTGCTGTGGGGAGATGGCATGTTGGAGGGACCTTCTGTGCTCGCTCTGTCCCAGTGTTGGCCTCAGGCCCCTCTGGCTGCCTTGGTCTGCCGTCTGCTAAGCTCTCAGAGTGATTGCGGACAAGGGAAGCCCCAGGGACCCTAAAGCCCCCTCCTGCCACCATGCTCTCCGCCGCGCCCCACCCCCTTGCTGCTACATGGATGCTGTTGTGGTTGCAGTTTGTAT

***************************************.....((..((((..((((((((.......((.(((..((((((.....((...))..))))))..))).))........))))))))..)))).....))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................TCGCTCTGTCCCAGTGTTGGCCTCAGGCCCCT......................................................................................................................................................... 32 0 1 1.00 1 1
................................................................................................TGGTCTGCCGTCTGCTAAGCTCTCAGAGT.................................................................................................................. 29 0 1 1.00 1 1
.....................................................CTCGCTCTGTCCCAGTGTTGGCCTCAGGCCCCTC........................................................................................................................................................ 34 0 1 1.00 1 1
..................................................................................................GTCTGCCGTCTGCTAAGCT.......................................................................................................................... 19 0 1 1.00 1 1
...............................................................................................................................TTGCGGACAAGGGAAGCCCCAGAA........................................................................................ 24 2 1 1.00 1 1
.................................................TGTGCTCGCTCTGTCCCAGTGTTGGCCTCAGGCCCC.......................................................................................................................................................... 36 0 1 1.00 1 1

Anti-sense strand reads

AAGGGACCGCCGACGACGACACCCCTCTACCGTACAACCTCCCTGGAAGACACGAGCGAGACAGGGTCACAACCGGAGTCCGGGGAGACCGACGGAACCAGACGGCAGACGATTCGAGAGTCTCACTAACGCCTGTTCCCTTCGGGGTCCCTGGGATTTCGGGGGAGGACGGTGGTACGAGAGGCGGCGCGGGGTGGGGGAACGACGATGTACCTACGACAACACCAACGTCAAACATA

***************************************************************************************************.....((..((((..((((((((.......((.(((..((((((.....((...))..))))))..))).))........))))))))..)))).....))*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................................CCAGACGGCAGACGATTCGAGAGTCTCACT................................................................................................................ 30 0 1 4.00 4 4
.........................................CCTGGAAGACACGAGCGAGACAGGGTCAC......................................................................................................................................................................... 29 0 1 1.00 1 1
.................................................................................................CCAGACGGCAGACGATTCGAGAGTCTCACTA............................................................................................................... 31 0 1 1.00 1 1
.....................................................................................................TCGGCAGACGATTCGAGAGTCTCACTA............................................................................................................... 27 1 1 1.00 1 1

Generated: 09/01/2015 at 12:06 PM