ID:

eca-mir-8996

 Coordinate:

chr7:2709886-2710020 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.9 -50.7 -50.7

Sense Strand Reads

AATCCCCCAGAGCTACATATCAACCCGCCCTCTAATAAAGCATTATTGCCCCGCGGGGACCTGCTCGGGGACGGCCGGCCTGGCCTGCGGACCCGAGCGGACGCCGGACGAGATGCTTGTGGATGAATTGTCCCGCGTGCTGCGGTGTGGCGCCGGGCCGGACGTGGATGTGTATAAACCTGCTGTCTCCCCCGATCCGCGTGTCTGTCGTCCTTCACACGCGTCGTTTCTGCGA

**********************************************************************(((.((((((((((((((..(((...((((((((.((((((....((...)).....)))))).)))).))))))))))).)))))))))).)))..******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGA............................................................................................................................ 26 0 1 5.00 5 5
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGAGATGC....................................................................................................................... 31 0 1 2.00 2 2
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGTT........................................................................................................................... 27 2 1 2.00 2 2
..............................................................................................GAGCGGACGCCGGACGAGA.......................................................................................................................... 19 0 1 2.00 2 2
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGTTA..................................................................................... 33 2 1 2.00 2 2
.....................................................................................TGCGGACCCGAGCGGACGCCGGACG............................................................................................................................. 25 0 1 2.00 2 2
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGATA..................................................................................... 33 3 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGAGATGCTTGT................................................................................................................... 35 0 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCAGACGAG........................................................................................................................... 27 1 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCAGACGA............................................................................................................................ 26 1 1 1.00 1 1
....................................................................................................................TTGTGGATGAATTGTCCCGCGTGCTGCGGTA........................................................................................ 31 1 1 1.00 1 1
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGTA...................................................................................... 32 1 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGAGATGCT...................................................................................................................... 32 0 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGAGA.......................................................................................................................... 28 0 1 1.00 1 1
..............ACATATCAACCCGCCCT............................................................................................................................................................................................................ 17 0 1 1.00 1 1
......................................................................................................GCCGGACGAGATGCTTGTGGATGAATT.......................................................................................................... 27 0 1 1.00 1 1
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGTAAA.................................................................................... 34 3 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCAGACGAGATGC....................................................................................................................... 31 1 1 1.00 1 1
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGTTAA.................................................................................... 34 3 1 1.00 1 1
......................................................................................GCGGACCCGAGCGGACGCCAGACGAGA.......................................................................................................................... 27 1 1 1.00 1 1
............................................................................................................CGAGATGCTTGTGGATGAATTGTCCCGCGAA................................................................................................ 31 2 1 1.00 1 1
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGC....................................................................................... 31 1 1 1.00 1 1
................................................................................TGGCCTGCGGACCCGAGCGGACGCCGGACG............................................................................................................................. 30 0 1 1.00 1 1
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGTT...................................................................................... 32 1 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCAGACGAGATGCTTGT................................................................................................................... 35 1 1 1.00 1 1
.....................................................................................................................TGTGGATGAATTGTCCCGCGTGCTGCGGTGAAA..................................................................................... 33 3 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCAGACGAGATGCT...................................................................................................................... 32 1 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCGGGACGAGATGT....................................................................................................................... 31 2 1 1.00 1 1
.......................................................................................................CCGGACGAGATGCTTGTGGATGAATTGTC....................................................................................................... 29 0 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCAGACGAGATGCTT..................................................................................................................... 33 1 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGAGATTT....................................................................................................................... 31 2 1 1.00 1 1
................................................................................TGGCCTGCGGACCCGAGCGGACGCCGG................................................................................................................................ 27 0 1 1.00 1 1
...............................................................................................................................TTGTCCCGCGTGCTGCGGTGTGGCG................................................................................... 25 0 1 1.00 1 1
.....................................................................................TGCAGACCCGAGCGGACGCCGGACGAGA.......................................................................................................................... 28 1 1 1.00 1 1
.....................................................................................TGCGGACCCGAGCGGACGCCGGACGAGT.......................................................................................................................... 28 1 1 1.00 1 1
..............................................................................................................................................................CGGACGTGGATGTGTATAAACCTGCTGTC................................................ 29 0 1 1.00 1 1

Anti-sense strand reads

TTAGGGGGTCTCGATGTATAGTTGGGCGGGAGATTATTTCGTAATAACGGGGCGCCCCTGGACGAGCCCCTGCCGGCCGGACCGGACGCCTGGGCTCGCCTGCGGCCTGCTCTACGAACACCTACTTAACAGGGCGCACGACGCCACACCGCGGCCCGGCCTGCACCTACACATATTTGGACGACAGAGGGGGCTAGGCGCACAGACAGCAGGAAGTGTGCGCAGCAAAGACGCT

********************************************************************(((.((((((((((((((..(((...((((((((.((((((....((...)).....)))))).)))).))))))))))).)))))))))).)))..********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................CCTGCGGTCTGCTCTACGAACACCTACTT............................................................................................................ 29 1 1 15.00 15 15
...................................................................................................CTGCGGTCTGCTCTACGAACACCTACTT............................................................................................................ 28 1 1 8.00 8 8
...........................................................................................................................................................CCGGCCTGCACCTACACATATTTGGACGAC.................................................. 30 0 1 5.00 5 5
..............................................................................................CTCGCCTGCGGCCTGCTCTACGAACACCT................................................................................................................ 29 0 1 3.00 3 3
..............................................................................................................................................................................................................CAGCAGGAAGTGTGCGCAGCAAAGACGCT 29 0 1 3.00 3 3
.....................................................................................................GCGGCCTGCTCTACGAACACCTACTT............................................................................................................ 26 0 1 2.00 2 2
..............TGTATAGTTGGGCGGGAGATTATTT.................................................................................................................................................................................................... 25 0 1 2.00 2 2
...........................................................................................................................................................................................TGGGGGCTAGGCGCACAGACAGCAGGAAGT.................. 30 1 1 2.00 2 2
...................................................................................................TTGCGGTCTGCTCTACGAACACCTACTTAAC......................................................................................................... 31 2 1 2.00 2 2
...............................................................................................................................................................................................................AGCAGGAAGTGTGCGCAGCAAAGACGCT 28 0 1 2.00 2 2
...................................................................................................CTGCGGCCTGCTCTACGAACACCTACTT............................................................................................................ 28 0 1 2.00 2 2
......................................................................................................CGGTCTGCTCTACGAACACCTACTTAAC......................................................................................................... 28 1 1 2.00 2 2
......................................................................................................AGGTCTGCTCTACGAACACCTACTT............................................................................................................ 25 2 1 1.00 1 1
...................................................................................................CTGCGGCCTGCTCTACGAACACCTACTTAA.......................................................................................................... 30 0 1 1.00 1 1
................................................................................................ATCCTGCGGTCTGCTCTACGAACACCTACTT............................................................................................................ 31 3 1 1.00 1 1
.............................................................................................................................................................................................................TCAGCAGGAAGTGTGCGCAGCAAAGAC... 27 1 1 1.00 1 1
.................................................................................................TCCTGCGGTCTGCTCTACGAACACCTACTT............................................................................................................ 30 2 1 1.00 1 1
...................................................................................................TTGCGGCCTGCTCTACGAACACCTACTTAAC......................................................................................................... 31 1 1 1.00 1 1
.............................................................................................................................................................................................TGGGCTAGGCGCACAGACAGCAGGAAGTGT................ 30 1 1 1.00 1 1
...............................................................................................................................................CCACACCGCGGCCCGGCCTGCACCTACACAT............................................................. 31 0 1 1.00 1 1
.................................................................................................GCCTGCGGTCTGCTCTACGAACACCTACTT............................................................................................................ 30 1 1 1.00 1 1
...........................................................................................................................................................CCGGCCTGCACCTACACATATTTGGACG.................................................... 28 0 1 1.00 1 1
.....................................................................................................GCGGTCTGCTCTACGAACACCTACTT............................................................................................................ 26 1 1 1.00 1 1
....................................................................................................AGCGGTCTGCTCTACGAACACCTACTT............................................................................................................ 27 2 1 1.00 1 1
....GGGGTCTCGATGTATAGTTGGGCGGGAGAT......................................................................................................................................................................................................... 30 0 1 1.00 1 1
...................................................................................................CTGCGGCCTGCTCTACGAACACCTACGT............................................................................................................ 28 1 1 1.00 1 1
............................................................................................................................................................................................GGGGGCTAGGCGCACAGACAGCAGGAA.................... 27 0 1 1.00 1 1
...............................................................................................................................................................................................................AGCAGGAAGTGTGCGCAGCAAAGACGC. 27 0 1 1.00 1 1
..................................................................................................CCTGCGGCCTGCTCTACGAACACCTACTT............................................................................................................ 29 0 1 1.00 1 1
........................................................................................................................................................CGCCCGGCCTGCACCTACACATATTTGGACG.................................................... 31 1 1 1.00 1 1
....................................................................................................TGCGGTCTGCTCTACGAACACCTACT............................................................................................................. 26 1 1 1.00 1 1
..................................................................................................CCTGCGGTCTGCTCTACGAACACCT................................................................................................................ 25 1 1 1.00 1 1
.............................................................................................TCTCGCCTGCGGTCTGCTCTACGAACAC.................................................................................................................. 28 2 1 1.00 1 1
....................................................................................................AGCGGCCTGCTCTACGAACACCTACTT............................................................................................................ 27 1 1 1.00 1 1
...........................................................................................................................................................................................................TGACAGCAGGAAGTGTGCGCAGCAAAG..... 27 1 1 1.00 1 1
.......................................................................................................TGTCTGCTCTACGAACACCTACTTAACA........................................................................................................ 28 2 1 1.00 1 1
.............................................................................................................................................................................................TTAGCTAGGCGCACAGACAGCAGGAAGT.................. 28 3 1 1.00 1 1
.................................................................................................GCCTGCGGCCTGCTCTACGAACACCTACT............................................................................................................. 29 0 1 1.00 1 1
......................................................................................................CGGTCTGCTCTACGAACACCTACTTA........................................................................................................... 26 1 1 1.00 1 1
.................................................................................................GCCTGCGGCCTGCTCTACGAACACCTACTT............................................................................................................ 30 0 1 1.00 1 1
..................................................................................................CCTGCGGTCCGCTCTACGAACACCTACTT............................................................................................................ 29 2 1 1.00 1 1
..................TAGTTGGGCGGGAGATTATTTCGT................................................................................................................................................................................................. 24 0 1 1.00 1 1
...................................................................................................CTGCGGTCTGCTCTACGAACACCT................................................................................................................ 24 1 1 1.00 1 1
...................................................................................................ATGCGGCCTGCTCTACGAACACCTACTT............................................................................................................ 28 1 1 1.00 1 1
...................................................................................................CTGCGGTCTGCTCTACGAACAACTACTT............................................................................................................ 28 2 1 1.00 1 1
..................................................................................................................................................CACCGCGGCCCGGCCTGCACCTACACAT............................................................. 28 0 1 1.00 1 1
.............................................................................................TCTCGCCTGCGGCCTGCTCTACGAACACCT................................................................................................................ 30 1 1 1.00 1 1
..............................................................................................................................................................................................................CAGCAGGAAGTGTGCGCAGCAAAG..... 24 0 1 1.00 1 1
..........................................................................................................................................................CCCGGCCTGCACCTACACATATTT......................................................... 24 0 1 1.00 1 1

Generated: 09/01/2015 at 12:05 PM