ID:

eca-mir-8989

 Coordinate:

chr7:46202589-46202711 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.7 -34.7 -34.7
mature

star

  1. chr7:46107512-46107530 -
  2. eca-mir-8989  chr7:46202658-46202676 -
  3. chr7:46338764-46338782 +
  4. chr7:46513173-46513191 +
  5. chr7:46992548-46992566 +
  6. chr7:47319028-47319046 -
  7. chr7:47403911-47403929 -
  8. chr7:48634045-48634063 -

Sense Strand Reads

TGGGGGCGGAGTGTCTGGCCCAAGGTGGACTTCCTTTTTCCCTCCTGCCGTGCTCGGGGTCAGTGGTCGCCTGCGCTTAAGGGTCCTGGTGGCTCTGCCGCAGCCTCTGTGACGCTGTGACCTGCACTGAGCATAGGAATCATAGGAAGGACTCAGGGGACCCAGGAGCCCTAGAAATGGTGAGTGTGCGGCCCCGGCGTGAGGACACGGGAGCAGGGGCTGG

**********************************************************************..........((.((((((...(((((....(((((((((((..(((((..((......)))))))...))))))..))).)))))))...)))))).)).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................................................................TAGGAATCATAGGAAGGACTCAG................................................................... 23 0 1 1.00 1 1
...................................................................................................................TGTGACCTGCACTGAGCATAGGAATC.................................................................................. 26 0 1 1.00 1 1
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGAGTCC.................................................... 29 1 7 0.43 3 3
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGAA....................................................... 26 1 9 0.33 3 3
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGA........................................................ 25 0 8 0.25 2 2
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGAGCC..................................................... 28 0 4 0.25 1 1
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGAGT...................................................... 27 1 8 0.25 2 2
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGATT...................................................... 27 2 9 0.22 2 2
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGAT....................................................... 26 1 8 0.13 1 1
.....................................................................................CTGGTGGCTCTGCCGCAGC....................................................................................................................... 19 0 8 0.13 1 1
..............................................................................................................................................TAGGAACGAGTCAGGGGACCCAGGA........................................................ 25 2 9 0.11 1 1
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGAAT...................................................... 27 2 10 0.10 1 1
..............................................................................................................................................TAGGAAGGACTCAGGGGACCCAGGAGTTT.................................................... 29 3 11 0.09 1 1
..............................................................................................................................................TAGGAAGGACTCCGGGGACCCAGGATT...................................................... 27 3 20 0.05 1 1

Anti-sense strand reads

ACCCCCGCCTCACAGACCGGGTTCCACCTGAAGGAAAAAGGGAGGACGGCACGAGCCCCAGTCACCAGCGGACGCGAATTCCCAGGACCACCGAGACGGCGTCGGAGACACTGCGACACTGGACGTGACTCGTATCCTTAGTATCCTTCCTGAGTCCCCTGGGTCCTCGGGATCTTTACCACTCACACGCCGGGGCCGCACTCCTGTGCCCTCGTCCCCGACC

****************************************************..........((.((((((...(((((....(((((((((((..(((((..((......)))))))...))))))..))).)))))))...)))))).)).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................................................................................................AGTCCCCTGGGTCCTCAGGATCTTTACCAC......................................... 30 1 3 1.00 3 3
......................................................................................................................................................TGAGTCCCCTGGGTCCTCAGGATCTTTACCA.......................................... 31 1 3 0.33 1 1
......................................................................................................................................................TGAGTCCCCTGGGTCCTCAGGATCTTTACCAC......................................... 32 1 3 0.33 1 1
......................................................................................................................................................AGAGTCCCCTGGGTCCTCAGGATCTTTAC............................................ 29 2 4 0.25 1 1

Generated: 09/01/2015 at 12:08 PM