ID:

eca-mir-8988

 Coordinate:

chr7:27014139-27014283 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.9 -56.3 -56.2 -56.2

Sense Strand Reads

CCTCCAAGAATTGTGCCTTATAGCATTTGGGGACCAGGGGGTAACTGCCCCTCCCTGAAATGTCCCTCAGCCTCTTCCCTTTTCCCCAGGGCCGTGTTCAAGCCGGCTGGGGAGGTAGGGGCCATGCCCTTAGCCCCCAGCTTGTTTGTACTGCAGTGAGGGGAAGAGGAGAGGAGGTGAACGGAGATTTCTTATGATAGAGTATCAAGTTCTTCCTGCCCACTTCCTCCAACCCACCCCTGGTC

****************************************..........((..................(((((((((((.....((..((.(((..(((((.((((((((...(((((((...)))))))..)))))))).)))))))).))..)))))))))))))))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................................................................................................................................TATGATAGAGTATCAAGTTCTTCCTGCCC........................ 29 0 1 4.00 4 4
..................................................................................................................................TAGCCCCCAGCTTGTTTGTACTGCAG......................................................................................... 26 0 1 3.00 3 3
.............................................................................................................................................TTGTTTGTACTGCAGTGAGGGGAAGAGGA........................................................................... 29 0 1 2.00 2 2
..................................................................................................................................TAGCCCCCAGCTTGTTTGTACTGCAGTGA...................................................................................... 29 0 1 2.00 2 2
...............................................................................................................................................................................................TTATGATAGAGTATCAAGTTCTTCCTGCCC........................ 30 0 1 2.00 2 2
..........TTGTGCCTTATAGCATTTGGGGACC.................................................................................................................................................................................................................. 25 0 1 1.00 1 1
...............................................................................................................................................................................................TTATGATAGAGTATCAAGTTCTTCCTGCC......................... 29 0 1 1.00 1 1
..........TTGTGCCTTATAGCATTTGGGGAC................................................................................................................................................................................................................... 24 0 1 1.00 1 1
...........................................................................................................................................................................................TTTCTTATGATAGAGTATCAAGTTCTTCCT............................ 30 0 1 1.00 1 1
................................................................................................................................................................................GTGAACGGAGATTTCTTATTATAGAGTATC....................................... 30 1 1 1.00 1 1
............................................................................................................................TGCCCTTAGCCCCCAGCTTGTTTGTACTGT........................................................................................... 30 1 1 1.00 1 1
.............TGCCTTATAGCATTTGGGGACCAGGGGGT........................................................................................................................................................................................................... 29 0 1 1.00 1 1
..................................................................................................................................TAGCCCCCAGCTTGTTTGTACTGCAGT........................................................................................ 27 0 1 1.00 1 1
.............................................................................................................................................TTGTTTGTACTGCAGTGAGGGGAAGAT............................................................................. 27 1 1 1.00 1 1
....................TAGCATTTGGGGACCAGGGGGTAACTGCCCCT................................................................................................................................................................................................. 32 0 1 1.00 1 1
............................................................................................................................TGCCCTTAGCCCCCAGCTTGTTTGTAC.............................................................................................. 27 0 1 1.00 1 1
................................................................................................................................................TTTGTACTGCAGTGAGGGGAAGAGG............................................................................ 25 0 1 1.00 1 1
..................................................................................................................................TAGCCCCCAGCTTGTTTGTACTGC........................................................................................... 24 0 1 1.00 1 1
......AGAATTGTGCCTTATAGCATTTGGGGAC................................................................................................................................................................................................................... 28 0 1 1.00 1 1
...............................................................................................................................................................................................TTATGATAGAGTATCAGGTTCTTCCTGCCC........................ 30 1 1 1.00 1 1
.......................................................TGAAATGTCCCTCAGCCTCTTCCCTTTTC................................................................................................................................................................. 29 0 1 1.00 1 1
..............................................................................................................................................TGTTTGTACTGCAGTGAGGGGAAGAGGAG.......................................................................... 29 0 1 1.00 1 1
....CAAGAATTGTGCCTTATAGCATTTGGGGAC................................................................................................................................................................................................................... 30 0 1 1.00 1 1

Anti-sense strand reads

GGAGGTTCTTAACACGGAATATCGTAAACCCCTGGTCCCCCATTGACGGGGAGGGACTTTACAGGGAGTCGGAGAAGGGAAAAGGGGTCCCGGCACAAGTTCGGCCGACCCCTCCATCCCCGGTACGGGAATCGGGGGTCGAACAAACATGACGTCACTCCCCTTCTCCTCTCCTCCACTTGCCTCTAAAGAATACTATCTCATAGTTCAAGAAGGACGGGTGAAGGAGGTTGGGTGGGGACCAG

**************************************************************************..........((..................(((((((((((.....((..((.(((..(((((.((((((((...(((((((...)))))))..)))))))).)))))))).))..)))))))))))))))**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:06 PM