ID:

eca-mir-8978

 Coordinate:

chr6:18961502-18961646 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.2 -39.2 -39.2

Sense Strand Reads

TCGGGCGGCGGACGCCCGGGCTAGCGGTGGGCGACGGGGTCACCTCCCCAAGGGCTCGGGACGTCCGGGGCTGGGAAGGGGAGGTGGACGTGATAGAGACGGGGCGGACCAGGTGCGCGGATCTCGGCCTCGCGCCCTCATCGCTCGTCTTTGGGGTTTCCGCCCACATGCGCTGGGACAATTCTCGGTCGAAGGTGCCCAGGCGCGGTGGGCGGGCATCTCCGCGGGCACTGCGCTGGGCACCG

***************************************************************************.......((((((.....((((((((((.(((....((((((.((.......)).))))))....))))))))))))).....))))))..................*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................................................................TCATCGCTCGTCTTTGGGGTTTCCGCCCAC.............................................................................. 30 0 1 1.00 1 1
............................................................................................................................................TCGCTCGTCTTTGGGGTTTCCGCCCACATG........................................................................... 30 0 1 1.00 1 1
.........................................................................................................................................TCATCGCTCGTCTTTGGGGTTTCCGCCCACT............................................................................. 31 1 1 1.00 1 1
..........................................................................................TGATAGAGACGGGGCGGACCAGGTGCGC............................................................................................................................... 28 0 1 1.00 1 1
.............................................................................................................................................................................TGGGACAATTCTCGGTCGAAGGTGCC.............................................. 26 0 1 1.00 1 1

Anti-sense strand reads

AGCCCGCCGCCTGCGGGCCCGATCGCCACCCGCTGCCCCAGTGGAGGGGTTCCCGAGCCCTGCAGGCCCCGACCCTTCCCCTCCACCTGCACTATCTCTGCCCCGCCTGGTCCACGCGCCTAGAGCCGGAGCGCGGGAGTAGCGAGCAGAAACCCCAAAGGCGGGTGTACGCGACCCTGTTAAGAGCCAGCTTCCACGGGTCCGCGCCACCCGCCCGTAGAGGCGCCCGTGACGCGACCCGTGGC

***************************************************************.......((((((.....((((((((((.(((....((((((.((.......)).))))))....))))))))))))).....))))))..................*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................................................................................TGGTGTACGCGACCCTGTTAAGAGCCAGCTT.................................................... 31 1 1 2.00 2 2
..................................................................................................................................................................TGGTGTACGCGACCCTGTTAAGAGCCAGCT..................................................... 30 1 1 1.00 1 1
.......................................................................................................................................................................AACGCGACCCTGTTAAGAGCCAGCTT.................................................... 26 1 1 1.00 1 1
.................................................................................................................................................................CGAGTGTACGCGACCCT................................................................... 17 1 11 0.09 1 1

Generated: 09/01/2015 at 12:04 PM