ID:

eca-mir-8976

 Coordinate:

chr6:9098530-9098650 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.4 -54.4 -53.8 -53.8

Sense Strand Reads

CAGGCCACCCTGGGGAGTTTCTGTGTCTCGTGGTTGTGTCTGACCACAGGCTTTACGTGTTGAAGGTGACAGGGGAGATCTGGTGAGTGAGCAGGCCGCGGCCAGGCTAGGGTCACAGCCCGCTGTGGGTCTCACTCCACTCTCACTCTTCCCCACCACTCTGCCTGCCTCTCTCCACAGTGGGCCTCCAGCTAGCTGGCTACAGCCAACCCTGGCTGTTC

***********************************.............((.(((((.(((.(((((((...(((((((...((((((((((....(((((((..((((........)))).)))))))..))))))).))).....)))))))...))).))...........)).))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................................................................CCGCTGTGGGTCTCACTCCACT................................................................................ 22 0 1 7.00 7 7
...................TCTGTGTCTCGTGGTTGTGTCTGACCACAGG........................................................................................................................................................................... 31 0 1 3.00 3 3
.......................................................................................................................CCGCTGTGGGTCTCACTCCACTT............................................................................... 23 1 1 2.00 2 2
.......................................................................................................................CCGCTGTGGGTCTCACTCCACTA............................................................................... 23 1 1 1.00 1 1
.......................................................................................................................CCGCTGTGGGTCTCACTCCAC................................................................................. 21 0 1 1.00 1 1
.......................................................................................................................CCGCTGTGGGTCTCACTCCGTT................................................................................ 22 2 1 1.00 1 1
..............................TGGTTGTGTCTGACCACAGGCTTTAC..................................................................................................................................................................... 26 0 1 1.00 1 1
...................TCTGTGTCTCGTGGTTGTGTCTGACCACA............................................................................................................................................................................. 29 0 1 1.00 1 1
......................................................................................................................CCCGCTGTGGGTCTCACTCCATT................................................................................ 23 1 1 1.00 1 1
...................TCTGTGTCTCGTGGTTGTGTCCGACCACAGG........................................................................................................................................................................... 31 1 1 1.00 1 1
.......................................................................................................................CCGCTGTGGGTCTCACTCCTATA............................................................................... 23 3 2 0.50 1 1

Anti-sense strand reads

GTCCGGTGGGACCCCTCAAAGACACAGAGCACCAACACAGACTGGTGTCCGAAATGCACAACTTCCACTGTCCCCTCTAGACCACTCACTCGTCCGGCGCCGGTCCGATCCCAGTGTCGGGCGACACCCAGAGTGAGGTGAGAGTGAGAAGGGGTGGTGAGACGGACGGAGAGAGGTGTCACCCGGAGGTCGATCGACCGATGTCGGTTGGGACCGACAAG

***********************************.............((.(((((.(((.(((((((...(((((((...((((((((((....(((((((..((((........)))).)))))))..))))))).))).....)))))))...))).))...........)).))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:04 PM