ID:

eca-mir-8961

 Coordinate:

chr22:19571396-19571540 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.9 -41.7 -41.7

Sense Strand Reads

AGGACCAGGAATTTCAAAGAATTCCAATATCCAAGTTAGAATTCCTTCCAGTGGCTTTGTTTTCAGCTGGACCATCAAAGCAGACGGGAATTACAGTGAGTCCCATGCCTGACCTCCAGAATTTGTGTAGGGGAGGGAGGTTACAGGCATGATATTTAGGTGATGTCTGTTAGGACTTCAGCACCTTGGCTGCCTAGATTGTAAATGCTTCCTGAATTTCACATCCTTTTTGCATGCCTTAGGAA

***************************************************************************....((((((....(((((..(((((..((((((((((((((....(((.....)))...))))))..))))))))..))))).)))))))))))((((....((((......)))))))).............************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................................................................................................................TGTTAGGACTTCAGCACCTTGGCTGCC................................................... 27 0 1 7.00 7 7
...................................................................................................................................................................TGTCTGTTAGGACTTCAGCACCTTGGCTGCCT.................................................. 32 0 1 5.00 5 5
...................................................................................................................................................................TGTCTGTTAGGACTTCAGCACCTTGGCTGCC................................................... 31 0 1 4.00 4 4
.......................................................................................................................................................................TGTTAGGACTTCAGCACCTTGGCTGCCT.................................................. 28 0 1 4.00 4 4
..............................................................................................................................................................................................TGCCTAGATTGTAAATGCTTCCTGAAT............................ 27 0 1 3.00 3 3
...........................TATCCAAGTTAGAATTCCTTCCAGTGGCTT............................................................................................................................................................................................ 30 0 1 3.00 3 3
.............................................................................................................TGACCTCCAGAATTTGTGTAGGGGAGGGAGT......................................................................................................... 31 1 1 3.00 3 3
...........................TATCCAAGTTAGAATTCCTTCCAGTGG............................................................................................................................................................................................... 27 0 1 2.00 2 2
....................................TAGAATTCCTTCCAGTGGCTTTGTTTTCAGC.................................................................................................................................................................................. 31 0 1 2.00 2 2
..........................................................................................................................................................TTTAGGTGATGTCTGTTAGGACTTCAGCACC............................................................ 31 0 1 2.00 2 2
..................................................................................................................................................................ATGTCTGTTAGGACTTCAGCACCTTGGCTGCC................................................... 32 0 1 2.00 2 2
...........................TATCCAAGTTAGAATTCCTTCCAGTGGCT............................................................................................................................................................................................. 29 0 1 2.00 2 2
..........................................................................................TTACAGTGAGTCCCATGCCTGACCTC................................................................................................................................. 26 0 1 2.00 2 2
.............................TCCAAGTTAGAATTCCTTCCAGTGG............................................................................................................................................................................................... 25 0 1 2.00 2 2
..................................................................................................................................................................................................TAGATTGTAAATGCTTCCTGAATTTCACATC.................... 31 0 1 1.00 1 1
...................................................................................................................................................................TGTCTGTTAGGACTTCAGCACCTTGGCT...................................................... 28 0 1 1.00 1 1
................................................................................................................................................................TGATGTCTGTTAGGACTTCAGCACCTTGGC....................................................... 30 0 1 1.00 1 1
...................................................................................................................................................................TGTCTGTTAGGACTTCAGCACCTTGGC....................................................... 27 0 1 1.00 1 1
...................................................................................................................................................................TGTCTGTTAGGAATTCAGCACCTTGGCTGCCT.................................................. 32 1 1 1.00 1 1
.....................................................................................................................................................................TCTGTTAGGACTTCAGCACCTTGGCTGCC................................................... 29 0 1 1.00 1 1
.......................................................................................................................................................................TGTTAGGACTTCAGCACCTTGTCTGCC................................................... 27 1 1 1.00 1 1
...................................................................................................................................................................TGTCTGTTAGGACTTCAGCACCTTGGCTGCCTTT................................................ 34 2 1 1.00 1 1
...................................................................................................................................................................TGTCTGTTAGGACTTCAGCACCTTGGCTGCCTA................................................. 33 0 1 1.00 1 1
....................................................................................................................................................................GTCTGTTAGGACTTCAGCACCTTGGCTGCC................................................... 30 0 1 1.00 1 1
........................................................................................................................................................TATTTAGGTGATGTCTGTTAGGACT.................................................................... 25 0 1 1.00 1 1
.....................................................................................................................................................TGATATTTAGGTGATGTCTGTTAGGACT.................................................................... 28 0 1 1.00 1 1
.........................................................................................................................................................................................TTGGCTGCCTAGATTGTAAGTGCTTCC................................. 27 1 1 1.00 1 1
..............................................................................................................................................................................................TGCCTAGATTGTAAATGCTTCCTGAA............................. 26 0 1 1.00 1 1
.......................................................................................................................................................................TGTTAGGACTTCAGCACCTTGGCTGCAA.................................................. 28 2 1 1.00 1 1
..................................................................................................................................................................ATGTCTGTTAGGACTTCAGCACCTTGGC....................................................... 28 0 1 1.00 1 1
.........................................................................................................................................................................................TTGGCTGCCTAGATTGTAAATGCTTCCTGAAT............................ 32 0 1 1.00 1 1
..............................................................................................................................................................................................TGCCTAGATTGTAAATGCTTCCTGAATTT.......................... 29 0 1 1.00 1 1
...........................TATCCAAGTTAGAATTCCTTCCAGTGGCTTT........................................................................................................................................................................................... 31 0 1 1.00 1 1
................................................................................................................................................................................................................TTCCTGAATTTCACATCCTTTTTGCA........... 26 0 1 1.00 1 1
......................................................................................................................................................................................................TTGTAAATGCTTCCTGAATTTCACATCCTTT................ 31 0 1 1.00 1 1
..............................................................TCAGCTGGACCATCAAAGCAGACGGGAA........................................................................................................................................................... 28 0 1 1.00 1 1
.......................................................................................................................................................................TGTTAGGACTTCAGCACCTTGGCTGCCTAGTC.............................................. 32 2 1 1.00 1 1
..........................................................................................TTACAGTGAGTCCCATGCCTGACCT.................................................................................................................................. 25 0 1 1.00 1 1
...................................................................................................................................................................TGTCTGGTACGACTTCAGCACCTTGGCTGCC................................................... 31 2 1 1.00 1 1
...............................................................................................................................................CAGGCATGATATTTAGGTGATGTCTGTTAGGT...................................................................... 32 1 1 1.00 1 1
.................................................................................................................................................................................................CTAGATTGTAAATGCTTCCTGGATTTCACATC.................... 32 1 1 1.00 1 1
.............................TCCAAGTTAGAATTCCTTCCAGTGGC.............................................................................................................................................................................................. 26 0 1 1.00 1 1
.........................................................................................................................................................................................TTGGCTGCCTAGATTGTAAATGCTTCC................................. 27 0 1 1.00 1 1
............................................................TTTCAGCTGGACCATCAAAGCAGACGGGA............................................................................................................................................................ 29 0 1 1.00 1 1
...............................................................................................................................................................GTGATGTCTGTTAGGACTTCAGCACCTTGG........................................................ 30 0 1 1.00 1 1
.......................................................................................................................................................................TGTTAGGACTTCAGCACCTTGGCTGCCTA................................................. 29 0 1 1.00 1 1
................................................................................................................................................................TGATGTCTGTTAGGACTTCAGCACCTTGGA....................................................... 30 1 1 1.00 1 1
.............................................TTCCAGTGGCTTTGTTTTCAGCTG................................................................................................................................................................................ 24 0 1 1.00 1 1
.........................................................TGTTTTAAGCTGGACCATCAAAGCAGA................................................................................................................................................................. 27 1 1 1.00 1 1
.....................................................................................................................................................................TCTGTTAGGACTTCAGCACCTTGGCTGCCT.................................................. 30 0 1 1.00 1 1
................................................CAGTGGCTTTGTTTTCAGCTGGAGCATCAAAGCAGACGGGAA........................................................................................................................................................... 42 1 1 1.00 1 1

Anti-sense strand reads

TCCTGGTCCTTAAAGTTTCTTAAGGTTATAGGTTCAATCTTAAGGAAGGTCACCGAAACAAAAGTCGACCTGGTAGTTTCGTCTGCCCTTAATGTCACTCAGGGTACGGACTGGAGGTCTTAAACACATCCCCTCCCTCCAATGTCCGTACTATAAATCCACTACAGACAATCCTGAAGTCGTGGAACCGACGGATCTAACATTTACGAAGGACTTAAAGTGTAGGAAAAACGTACGGAATCCTT

************************************....((((((....(((((..(((((..((((((((((((((....(((.....)))...))))))..))))))))..))))).)))))))))))((((....((((......)))))))).............*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................TTAGGGTACGGACTGGAGGTCTTAAACACAT.................................................................................................................... 31 1 1 1.00 1 1

Generated: 09/01/2015 at 11:50 AM