ID:

eca-mir-8957

 Coordinate:

chr21:2287480-2287624 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.6 -23.4 -23.4

Sense Strand Reads

agatgttagcccagggctaatcttcctcaccaaacaaaACCCCCCAAAAAAAGCCCAGAACAAGGGTCACTGGATGTGGGTTCAGTTTGCCTTGTGAACTTAGTGGTTGTTCTGGGGCAGCTCTCGTCACTGCCTTCTCTGAGCCACCCTATTCATCCAGGAGAACTCAGGACCTGCCAGCCCGAGCCTTCTCACTGACCCCAGCTGAGTGCCTTCGGACTTTCGTCCATGCTATCTTCTATGTG

**********************************************************************************************************.....((.((((.((....(((.(((..((((((...................))))))..))))))..))..)))).))..............********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCGA............................................................ 30 0 1 27.00 27 27
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTGCC................................................................... 29 0 1 14.00 14 14
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTGCCT.................................................................. 30 1 1 13.00 13 13
......................................................................................................................................TTCTCTGAGCCACCCTATTCATCCAGGA................................................................................... 28 0 1 11.00 11 11
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCGAGC.......................................................... 32 0 1 10.00 10 10
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCC............................................................... 27 0 1 9.00 9 9
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACC....................................................................... 25 0 1 8.00 8 8
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCGAG........................................................... 31 0 1 7.00 7 7
.........................................................................................................................................TCTGAGCCACCCTATTCATCCAGGA................................................................................... 25 0 1 7.00 7 7
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCT...................................................................... 26 0 1 6.00 6 6
.......................................................................................................................................................TTCATCCAGGAGAACTCAGGACCTGCC................................................................... 27 0 1 5.00 5 5
.......................................................................................................................................................TTCATCCAGGAGAACTCAGGACCTGCCT.................................................................. 28 1 1 5.00 5 5
......................................................................................................................................TTCTCTGAGCCACCCTATTCATCCAGGAGA................................................................................. 30 0 1 5.00 5 5
.........................................................................................................................................TCTGAGCCACCCTATTCATCCAGGAGAACT.............................................................................. 30 0 1 4.00 4 4
.......................................................................................................................................................TTCATCCAGGAGAACTCAGGACCTGCCAGC................................................................ 30 0 1 4.00 4 4
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTGC.................................................................... 28 0 1 3.00 3 3
.........................................................................................................................................TCTGAGCCACCCTATTCATCCAGGAGA................................................................................. 27 0 1 3.00 3 3
..........................................................................................................................................................................................................AGCTGAGTGCCTTCGGACTTTCGTCT................. 26 1 1 3.00 3 3
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCGAT........................................................... 31 1 1 3.00 3 3
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATTCATC........................................................................................ 27 0 1 3.00 3 3
......................................................................................................................................TTCTCTGAGCCACCCTATTCATCCAGGAG.................................................................................. 29 0 1 3.00 3 3
.........................................................................................................................................TCTGAGCCACCCTATTCATCCAGGAG.................................................................................. 26 0 1 2.00 2 2
.............................................................................................................................................................................................................TGAGTGCCTTCGGACTTTCGTCCATGCT............ 28 0 1 2.00 2 2
..............................................................................................................................TCACTGCCTTCTCTGAGCCACCCAAAG............................................................................................ 27 3 1 2.00 2 2
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCT.............................................................. 28 1 1 2.00 2 2
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTGTT................................................................... 29 2 1 2.00 2 2
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCCACT................................................................................................. 27 1 1 2.00 2 2
.......................................................................................................................................................TTCATCCAGGAGAACTCAGGACCTGCCAGCC............................................................... 31 0 1 2.00 2 2
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCCAC.................................................................................................. 26 0 1 2.00 2 2
.......................................................................................................................................TCTCTGAGCCACCCTATTCATCCAGGA................................................................................... 27 0 1 2.00 2 2
............................................................................................TGTGAACTTAGTGGTTGTTCTGGGGCAGC............................................................................................................................ 29 0 1 2.00 2 2
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTGCA................................................................... 29 1 1 2.00 2 2
............................................................................................................................................................CCAGGAGAACTCAGGACCTGCCAGCCC.............................................................. 27 0 1 2.00 2 2
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATTCATCAAA..................................................................................... 30 2 1 2.00 2 2
...............................................................................................................................CACTGCCTTCTCTGAGCCACCCTATTCATCA....................................................................................... 31 1 1 2.00 2 2
.............................................................................................................................................................CAGGAGAACTCAGGACCTGCCAGCCCGAGC.......................................................... 30 0 1 2.00 2 2
........................................................................................................................................................TCATCCAGGAGAACTCAGGACCTGCCT.................................................................. 27 1 1 2.00 2 2
.............................................................................................................................................................................................................TGAGTGCCTTCGGACTTTCGTCCATGCTT........... 29 1 1 1.00 1 1
...........................................................ACAAGGGTCACTGGATGTGGGTT................................................................................................................................................................... 23 0 1 1.00 1 1
............................................................................................TGTGAACTTAGTGGTTGTTCTGGGGCA.............................................................................................................................. 27 0 1 1.00 1 1
...............................................................................................................................................................................................TCACTGACCCCAGCTGAGTGCCTTCGGACTT....................... 31 0 1 1.00 1 1
......................................................................................................................................TTCTCTGAGCCACCCTATTCATCCAGGAGATT............................................................................... 32 2 1 1.00 1 1
........................................................................................................................................................................................................CCAGCTGAGTGCCTTCGGACTTTCGT................... 26 0 1 1.00 1 1
........................................................................................................................................................TCATCCAGGAGAACTCAGGACCTGCC................................................................... 26 0 1 1.00 1 1
..............................................................................................................................................................AGGAGAACTCAGGACCTGCCAGCCCGAG........................................................... 28 0 1 1.00 1 1
................................................................................................................................................CACCCTATTCATCCAGGAGAACTCAGGAC........................................................................ 29 0 1 1.00 1 1
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTG..................................................................... 27 0 1 1.00 1 1
........................................................................................................................................................TCATCCAGGAGAACTCAGGACCTTCCAGCT............................................................... 30 2 1 1.00 1 1
.............................................................................................................................................................................................................TGAGTGCCTTCGGACTTTCGTCCATGC............. 27 0 1 1.00 1 1
.......................................................................................TGCCTTGTGAACTTAGTGGTTGTTCTG................................................................................................................................... 27 0 1 1.00 1 1
......................................................................................................................................................................................................................TCGGACTTTCGTCCATGCTATCTTCTATGT. 30 0 1 1.00 1 1
.......................................................................................TGCCTTGTGAACTTAGTGGTTGTTCTGG.................................................................................................................................. 28 0 1 1.00 1 1
.............................................................................................................................................................CAGGAGAACTCAGGACCTGCCAGCCCGA............................................................ 28 0 1 1.00 1 1
.....................................................................................................................................................TATTCATCCAGTAGAACTCAGGACCTGCCAGC................................................................ 32 1 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCG............................................................. 29 0 1 1.00 1 1
...........................................................................................................................................................TCCAGGGGAACTCAGGACCTGCCAGCCCG............................................................. 29 1 1 1.00 1 1
......................................................................................TTGCCTTGTGAAATTAGTGGTTGTTCT.................................................................................................................................... 27 1 1 1.00 1 1
......................................................................................................................................................................TCAGGACCTGCCAGCCCGAGCCTTCTCACTAA............................................... 32 1 1 1.00 1 1
............................................................................................................................................................................................TTCTCACTGACCCCAGCTGAGTGCCTTCGGAC......................... 32 0 1 1.00 1 1
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCC.................................................................................................... 24 0 1 1.00 1 1
.................................................................................TCAGTTTGCCTTGTGAACTTAGTGGTTGT....................................................................................................................................... 29 0 1 1.00 1 1
..............................................................................................................................TCACTGCCTTCTCTGAGCCACCCT............................................................................................... 24 0 1 1.00 1 1
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATTCATCAAG..................................................................................... 30 1 1 1.00 1 1
............................................................................................................................................................CCAGGAGAACTCAGGACCTGCCAGCCCGAGC.......................................................... 31 0 1 1.00 1 1
............................................................................................TGTGAACTTAGTGGTTGTTCTGGGG................................................................................................................................ 25 0 1 1.00 1 1
.........................................................................................................................................................................................................CAGCTGAGTGCCTTCGGACTTTCGTCTT................ 28 2 1 1.00 1 1
.........................................................................................................................................TCTGAGCCACCCTATTCATCCAGG.................................................................................... 24 0 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCGATA.......................................................... 32 2 1 1.00 1 1
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCCACCCTATT............................................................................................ 32 0 1 1.00 1 1
...................................................................CACTGGATGTGGGTTCAGTTTGCCTTGTGTT................................................................................................................................................... 31 2 1 1.00 1 1
.............................................................................................................................................................CAGGAGAACTCAGGACCTGCCAGCCC.............................................................. 26 0 1 1.00 1 1
..................................................................TCACTGGATGTGGGTTCAGTTTGCCTTGTG..................................................................................................................................................... 30 0 1 1.00 1 1
........................................................................................................................................................TCATCCAGGAGAACTCAGGACCTGCT................................................................... 26 1 1 1.00 1 1
......................................................................................................................................................................TCAGGACCTGCCAGGCCGAGCCTTCTCACT................................................. 30 1 1 1.00 1 1
.......................TCCTCACCAAACAAAACCCCCCAAAAAAAGCCAT............................................................................................................................................................................................ 34 2 1 1.00 1 1
............................................................................................................................................................CCAGGAGAACTCAGGACCTGCCAGCCT.............................................................. 27 1 1 1.00 1 1
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCCACCCTA.............................................................................................. 30 0 1 1.00 1 1
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATTCATCCAGGA................................................................................... 32 0 1 1.00 1 1
......................................................................................TTGCCTTGTGAACTTAGTGGTTGTTCT.................................................................................................................................... 27 0 1 1.00 1 1
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATTCATCT....................................................................................... 28 1 1 1.00 1 1
......................................................................................................................................................................................................................TCGGACTTTCGTCCATGCTATCTTCTATGTG 31 0 1 1.00 1 1
.......................................................................................................................................................TTCATCCAGGAGAACTCAGGAGATGCCA.................................................................. 28 2 1 1.00 1 1
......................................................................................................................................................ATTCATCCAGGAGAACTCAGGACCTGCCAT................................................................. 30 1 1 1.00 1 1
....................................................................................................TAGTGGTTGTTCTGGGGCAGCTCTCGTCT.................................................................................................................... 29 1 1 1.00 1 1
..............................................................................................................................................................AGGAGAACTCAGGACCTGCCAGCCCGAGC.......................................................... 29 0 1 1.00 1 1
......................................................................................................................................................................TCAGGACCTGCCAGCCCGAGCCTTCTCT................................................... 28 1 1 1.00 1 1
.............................................................................................................................................................CAGGAGAACTCAGGACCTGCCAGCCCT............................................................. 27 1 1 1.00 1 1
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTA..................................................................... 27 1 1 1.00 1 1
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCTGA.................................................................... 28 1 1 1.00 1 1
............................................................................................................................................................CCAGGAGAACTCAGGACCTGCCAGCCCGAGA.......................................................... 31 1 1 1.00 1 1
.......................................................................................................................................TCTCTGAGCCACCCTATTCATCCAGGAGA................................................................................. 29 0 1 1.00 1 1
.......................................................................................................................................................................................................CCCAGCTGAGTGCCTTCGGACTTTCGT................... 27 0 1 1.00 1 1
.................................................................................TCAGTTTGCCTTGTGAACTTAGTGGT.......................................................................................................................................... 26 0 1 1.00 1 1
......................TTCCTCACCAAACAAAACCCCCCAAAAAAAGCCT............................................................................................................................................................................................. 34 1 1 1.00 1 1
........................................................................................................................................................TCATCCAGGAGAACTCAGGACCTGCCAGCCCGAGCCT........................................................ 37 0 1 1.00 1 1
..............................................................................................................................................................AGGAGAACTCAGGACCTGCCAGCC............................................................... 24 0 1 1.00 1 1
..............................................................................................................................TCACTGCCTTCTCTGAGCCACCCTAG............................................................................................. 26 1 1 1.00 1 1
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCCACCCT............................................................................................... 29 0 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCGTT........................................................... 31 2 1 1.00 1 1
.......................................................................................TGCCTTGTGAACTTAGTGGTTGTTCTGGGG................................................................................................................................ 30 0 1 1.00 1 1
.......................TCCTCACCAAACAAAACCCCCCAAATT................................................................................................................................................................................................... 27 2 1 1.00 1 1
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCCAT.................................................................................................. 26 1 1 1.00 1 1
.........................................................................................................................................................................................................CAGCTGAGTGCCTTCGGACTTTCGTCCATGCT............ 32 0 1 1.00 1 1
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATTCAT......................................................................................... 26 0 1 1.00 1 1
.............................................................................................................................................................CAGGAGAACTCAGGACCTGCCCGCC............................................................... 25 1 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCCGAGA.......................................................... 32 1 1 1.00 1 1
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATTCATCC....................................................................................... 28 0 1 1.00 1 1
.........................................................................................................................................TCTGAGCCACCCTATTCATCCAGGAGAAC............................................................................... 29 0 1 1.00 1 1
......................................................................................................................................TTCTCTGAGCCACCCTATTCATCCA...................................................................................... 25 0 1 1.00 1 1
................................................................................TTCAGTTTGCCTTGTGAACTTAGTGGTT......................................................................................................................................... 28 0 1 1.00 1 1
..........................................................................................................................CTCGTCACTGCCTTCTCTGAGCCACC................................................................................................. 26 0 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCA............................................................... 27 1 1 1.00 1 1
..................................................................................................................................TGCCTTCTCTGAGCCACCCTATT............................................................................................ 23 0 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGCCAGCCC.............................................................. 28 0 1 1.00 1 1
........................................................................................................................................CTCTGAGCCACCCTATTCATCCAGGAGAAT............................................................................... 30 1 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACGCAGGACCTGCCAGCCCGA............................................................ 30 1 1 1.00 1 1
........................................................................................................................................................TCATCCAGGAGAACTCAGGACCTGCCAGCCCT............................................................. 32 1 1 1.00 1 1
......................................................................................TTGCCTTGTGAACTTAGTGGTTGGTCT.................................................................................................................................... 27 1 1 1.00 1 1
.......................................................................................................................................................TTTATCCAGGAGAACTCAGGACCTGCC................................................................... 27 1 1 1.00 1 1
.........................................................................................................................TCTCGTCACTGCCTTCTCTGAGCA.................................................................................................... 24 1 1 1.00 1 1
......................................................................................................................................................ATTCATCCAGGAGAACTCAGGACC....................................................................... 24 0 1 1.00 1 1
.....................................................................................................................................................TATTCATCCAGGAGAACTCAGGACCG...................................................................... 26 1 1 1.00 1 1
........................................................................................................................................................TCATCCAGGAGAACTCAGGACCTGCCAGCCCGAGCT......................................................... 36 1 1 1.00 1 1
.......................................................................................................................................................TTCATCGAGCAGAACTCAGGACCTGCCAGC................................................................ 30 2 1 1.00 1 1
..............................................................................................................................................................AGGAGAACTCAGGACCTGCCAGCCCGA............................................................ 27 0 1 1.00 1 1
.......................................................................................................................................................TTCATCCAGGAGAACTCAGGACCTG..................................................................... 25 0 1 1.00 1 1
...........................................................................................................................................................TCCAGGAGAACTCAGGACCTGACAGCA............................................................... 27 2 1 1.00 1 1
..................................................................................................................................TGCCTTCTCTGAGCCACC................................................................................................. 18 0 4 0.25 1 1

Anti-sense strand reads

TgTtgttTgGGGTgggGtTTtGttGGtGTGGTTTGTTTTGGGGGGTTTTTTTCGGGTCTTGTTCCCAGTGACCTACACCCAAGTCAAACGGAACACTTGAATCACCAACAAGACCCCGTCGAGAGCAGTGACGGAAGAGACTCGGTGGGATAAGTAGGTCCTCTTGAGTCCTGGACGGTCGGGCTCGGAAGAGTGACTGGGGTCGACTCACGGAAGCCTGAAAGCAGGTACGATAGAAGATACAC

*********************************************.....((.((((.((....(((.(((..((((((...................))))))..))))))..))..)))).))..............********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:50 AM