ID:

eca-mir-8955

 Coordinate:

chr24:20344153-20344295 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.2 -43.0 -42.8 -42.8

Sense Strand Reads

CTTTTCCTTGGTGCCTAATGTGGAAAGGAGTGCCTCCAAGTGTATGACTGTCGTACCTCATCCCATCATCTTTTGAGGCTGGATTCAAAGGACTTGGAATCATTCCTGCTTCCAAAGCCAACTATGAGGTTGAGGAGGGTCAAGAATATGTTCCAGGACTTCACCCAGACTGGCACCGTAAATGGTGGGGAGTCCCACAGGTCCCCCAGACCCTGCCTGGCTTGAAGCTTGCCACCACTGCAT

********************************************************((...((((((......((..(((((.......(((((((((((.((((.(((((((..((((........))))..)))))..)).))))..))))))))..))).......)))))..)).....)))))).))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................................................................TATGTTCCAGGACTTCACCCAGACTGGCACC.................................................................. 31 0 1 14.00 14 14
.......................................................................TTTGAGGCTGGATTCAAAGGACTTGGAATC.............................................................................................................................................. 30 0 1 8.00 8 8
.........................................................................TGAGGCTGGATTCAAAGGACTTGGAATC.............................................................................................................................................. 28 0 1 5.00 5 5
..................................TCCAAGTGTATGACTGTCGTACCTCATCCC................................................................................................................................................................................... 30 0 1 5.00 5 5
............................................................................................................................................CAAGAATATGTTCCAGGACTTCACCCAGAC......................................................................... 30 0 1 4.00 4 4
..................................................................................ATTCAAAGGACTTGGAATCATTCCTGCTT.................................................................................................................................... 29 0 1 3.00 3 3
...................................................................................TTCAAAGGACTTGGAATCATTCCTGCTTCC.................................................................................................................................. 30 0 1 3.00 3 3
........................................................................TTGAGGCTGGATTCAAAGGACTTGGAATT.............................................................................................................................................. 29 1 1 2.00 2 2
.......................................................................................................................................................TCCAGGACTTCACCCAGACTGGCACCGTAAA............................................................. 31 0 1 2.00 2 2
..................................................................................................................................................TATGTTCCAGGACTTCACCCAGAC......................................................................... 24 0 1 2.00 2 2
.......................................................................................................................................................TCCAGGACTTCACCCAGACTGGCACC.................................................................. 26 0 1 2.00 2 2
....................................................................................TCAAAGGACTTGGAATCATTCCTGCTTCCA................................................................................................................................. 30 0 1 2.00 2 2
.................................CTCCAAGTGTATGACTGTCGTACCTC........................................................................................................................................................................................ 26 0 1 2.00 2 2
..............................TGCCTCCAAGTGTATGACTGTCGTACC.......................................................................................................................................................................................... 27 0 1 2.00 2 2
..........................................TATGACTGTCGTACCTCATCCCATCATC............................................................................................................................................................................. 28 0 1 2.00 2 2
...................................................................................TTCAAAGGACTTGGAATCATTCCTGCT..................................................................................................................................... 27 0 1 2.00 2 2
...........................................................................................................................................TCAAGAATATGTTCCAGGACTTCACCCAGA.......................................................................... 30 0 1 2.00 2 2
....................................................................TCTTTTGAGGCTGGATTCAAAGGACTTGGTT................................................................................................................................................ 31 2 1 1.00 1 1
....................................................................................TCAAAGGACTTGGAATCATTCCTGCT..................................................................................................................................... 26 0 1 1.00 1 1
..................................TCCAAGTGTATGACTGTCGTACCGCATCCC................................................................................................................................................................................... 30 1 1 1.00 1 1
................................CCTCCAAGTGTATGACTGTCGTACC.......................................................................................................................................................................................... 25 0 1 1.00 1 1
......................................................................TTTTGAGGCTGGATTCAAAGGACTTGGAATC.............................................................................................................................................. 31 0 1 1.00 1 1
.....................................................................................CGAAGGACTTGGAATCATTCCTGCTTCCA................................................................................................................................. 29 1 1 1.00 1 1
.................................................................................................................................TTGAGGAGGGTCAAGAATATGTTC.......................................................................................... 24 0 1 1.00 1 1
..................................................................................................................................................TATGTTCCAGGACTTCACCGAGACTGGCACC.................................................................. 31 1 1 1.00 1 1
...............................GCCTCCAAGTGTATGACTGTCGTACC.......................................................................................................................................................................................... 26 0 1 1.00 1 1
..................................TCCAAGTGTATGGCTGTCGTACCACATCCC................................................................................................................................................................................... 30 2 1 1.00 1 1
..............................................................................................................................................AGAATATGTTCCAGGACTTCACCCAGACTGGCACC.................................................................. 35 0 1 1.00 1 1
..................................TCCAAGTGTATGACTGTCGTACCTCATCCCT.................................................................................................................................................................................. 31 1 1 1.00 1 1
..................................TCCAAGTGTATGACTGTCGTACCTCATCC.................................................................................................................................................................................... 29 0 1 1.00 1 1
........................................................................TTGAGGCTGGATTCAAAGGACTTGGAATC.............................................................................................................................................. 29 0 1 1.00 1 1
...................................................................................TTCAAAGGACTTGGAATCAGTCCTGCTTCC.................................................................................................................................. 30 1 1 1.00 1 1
............................AGTGCCTCCAAGTGTATGACTGTCGTACC.......................................................................................................................................................................................... 29 0 1 1.00 1 1
..................................................................................ATTCAAAGGACTTGGAATCATTCCTGCTTC................................................................................................................................... 30 0 1 1.00 1 1
.........................................GTATGACTGTCGTACCTCATCCCATCATCTT........................................................................................................................................................................... 31 0 1 1.00 1 1
...................................................................................TTCAAAGGACTTGGAATCATTCCTGCTT.................................................................................................................................... 28 0 1 1.00 1 1
............................................TGACTGTCGTACCTCATCCCATCATCTTTT......................................................................................................................................................................... 30 0 1 1.00 1 1
.......................................................................TTTGAGGCTGGGTTCAAAGGACTTGGAATC.............................................................................................................................................. 30 1 1 1.00 1 1
.....................................................................................CAAAGGACTTGGAATCATTCCTGCTTCCA................................................................................................................................. 29 0 1 1.00 1 1
.............................GTGCCTCCAAGTGTATGACTGTCGTACC.......................................................................................................................................................................................... 28 0 1 1.00 1 1
...................................................................................TTCAAACGACTTGGAATCATTCCTGCT..................................................................................................................................... 27 1 1 1.00 1 1
.................................................................................................................................................ATATGTTCCAGGACTTCACCCAGACT........................................................................ 26 0 1 1.00 1 1
.........................................................................TGAGGCGGGGTTCAAAGGACTTGGAATC.............................................................................................................................................. 28 2 1 1.00 1 1
....................................................................................TCAAAGGACTTGGAATCATTCCTGCTTCC.................................................................................................................................. 29 0 1 1.00 1 1
..................................................................................ATTCAAAGGACTTGGAATCATTCCTGCT..................................................................................................................................... 28 0 1 1.00 1 1
..............................................................................CTGGATTCAAAGGACTTGGAATCATTCCT........................................................................................................................................ 29 0 1 1.00 1 1
........................................................................TTGAGGCTGGATTCAAAGGACTTGGAATCT............................................................................................................................................. 30 1 1 1.00 1 1
.....................................................................................CAAAGGACTGGGAATCATTCCTGCTTCCAA................................................................................................................................ 30 1 1 1.00 1 1
...........................................................................................................................................TCAAGAATATGTTCCAGGACTTCACCCAG........................................................................... 29 0 1 1.00 1 1

Anti-sense strand reads

GAAAAGGAACCACGGATTACACCTTTCCTCACGGAGGTTCACATACTGACAGCATGGAGTAGGGTAGTAGAAAACTCCGACCTAAGTTTCCTGAACCTTAGTAAGGACGAAGGTTTCGGTTGATACTCCAACTCCTCCCAGTTCTTATACAAGGTCCTGAAGTGGGTCTGACCGTGGCATTTACCACCCCTCAGGGTGTCCAGGGGGTCTGGGACGGACCGAACTTCGAACGGTGGTGACGTA

***************************************************((...((((((......((..(((((.......(((((((((((.((((.(((((((..((((........))))..)))))..)).))))..))))))))..))).......)))))..)).....)))))).))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:53 AM