ID:

eca-mir-8954

 Coordinate:

chr24:41938698-41938840 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.5 -42.7

Sense Strand Reads

GCTAATGCTCCTTTTCACTCTATCACAGCAACGTTGAAATCACATCTACCTCTTAAACAATTGGGTCTGAACAAGAGCGTATCAAGCGTTTGGCGGTGTCTGGCGTAGAGCAGGAGGGCAGTGGAGGGCGGCTGTTTTACTCCTGGCCCCGACTGtGttGtGGgTTTGTGtGTTtgGTGGTTTTGgggttttTtgtGGttGTGGTGGtGggtGTTgTgtTGggtGGGGTTTTgTGtgTgtGtt

*************************************.............................(((((((.((((.((.((.(((.((((.(((....((.(((((((((....((........))..))))))))).))..))))))).)))..)))).))))...))))))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................TTAAACAATTGGGTCTGAACAAGAGC..................................................................................................................................................................... 26 0 1 6.00 6 6
.....................................................TAAACAATTGGGTCTGAACAAGAGC..................................................................................................................................................................... 25 0 1 3.00 3 3
....................................................TTAAACAATTGGGTCTGAACAAGAGCGT................................................................................................................................................................... 28 0 1 2.00 2 2
.....................................................TAAACAATTGGGTCTGAACAAGAGCGT................................................................................................................................................................... 27 0 1 2.00 2 2
.....................................................TAAACAATTGGGTCTGAACAAGAGCGTAT................................................................................................................................................................. 29 0 1 2.00 2 2
.........................................................................................................................................TACTCCTGGCCCCGACTGAGAAGAGG................................................................................ 26 0 1 2.00 2 2
..................................................TCTTAAACAATTGGGTCTGAACAAGAGCGT................................................................................................................................................................... 30 0 1 2.00 2 2
............................................................TTGGGTCTGAACAAGAGCGTATCAAGCGTTAT....................................................................................................................................................... 32 2 1 1.00 1 1
...............................................................................TATCAAGCGTTTAGCGGTGTCTGGCG.......................................................................................................................................... 26 1 1 1.00 1 1
..........................................................................................TGGCGGTGTCTGGCGTAGAGCAGG................................................................................................................................. 24 0 1 1.00 1 1
............................................................................................GCGGTGTCTGGCGTAGAGCAGGAGGGCAGT......................................................................................................................... 30 0 1 1.00 1 1
.............................................................TGGGTCTGAACAAGAGCGTATCAAGCGTT......................................................................................................................................................... 29 0 1 1.00 1 1
.....................................................TAAACAATTGCGTCTGAACAAGAGC..................................................................................................................................................................... 25 1 1 1.00 1 1
.......................................................................................................................................TTTACTCCTGGCCCCGACTGAGAA.................................................................................... 24 0 1 1.00 1 1
..................................................TCTTAAACAGTTGGGTCTGAACAAGAGC..................................................................................................................................................................... 28 1 1 1.00 1 1
.................................................................................TCAAGCGTTTGGCGGTGTCTGGCGTA........................................................................................................................................ 26 0 1 1.00 1 1
..........................................................................GAGCGTATCAAGCGTTTGGCGGTGTCTGGC........................................................................................................................................... 30 0 1 1.00 1 1
...............................................................................TATCAAGCGTTTGGCGGTGTCTGGCGTA........................................................................................................................................ 28 0 1 1.00 1 1
...............................................................................TATCAAGCGTTTGGCGGTGTCTGGCGT......................................................................................................................................... 27 0 1 1.00 1 1
.................CTCTATCACAGCAACGTTGAAATCACATCT.................................................................................................................................................................................................... 30 0 1 1.00 1 1
...............................................................................TATCAAGCGTTTGGCGGTGTCTGGCG.......................................................................................................................................... 26 0 1 1.00 1 1
.....................................................TAAACAATTGGGTCTGAACAAGAGCGG................................................................................................................................................................... 27 1 1 1.00 1 1
.................................TTGAAATCACATCTACCTCTTAAACAA....................................................................................................................................................................................... 27 0 1 1.00 1 1
............................................................................................................................................................................TTACGTGGTTTTGCCCAAAATGCAGGAA........................................... 28 1 1 1.00 1 1

Anti-sense strand reads

CGATTACGAGGAAAAGTGAGATAGTGTCGTTGCAACTTTAGTGTAGATGGAGAATTTGTTAACCCAGACTTGTTCTCGCATAGTTCGCAAACCGCCACAGACCGCATCTCGTCCTCCCGTCACCTCCCGCCGACAAAATGAGGACCGGGGCTGACtCttCtCCgAAACACtCAAtgCACCAAAACgggttttAtgtCCttCACCACCtCggtCAAgAgtACggtCCCCAAAAgACtgAgtCtt

*****************************************************************.............................(((((((.((((.((.((.(((.((((.(((....((.(((((((((....((........))..))))))))).))..))))))).)))..)))).))))...))))))).************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:53 AM