ID:

eca-mir-8953

 Coordinate:

chr23:28713907-28714043 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.8 -34.5 -34.5

Sense Strand Reads

TACCAGCTTTCCTTAACCAATTAATTTAATCACACCCAAGGTTAGGAGAGAAAGGGAAGTGGTGAATAACTGCTACTAAGTGCCTGGTCTAGGGCTGGAAGGATATATACAGGCTCAACACTGCCCCAGTATGTCTTCTTTCCAGCCCCCATGTCTCCTGTGGAAGATTATATTATGCTCTTCCCAGTATTTCATTTTCTGTTCTTTCAGTGACCCTTTCTGCAGGtGGtTTgTtgt

***************************************************************************(((((.((.(((....((((((((((((.((((((.(((........)))...))))))..))))))))))))))).))...)).)))...*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTT................................................................................... 25 1 1 8.00 8 8
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATT.................................................................................... 24 1 1 7.00 7 7
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTTTT................................................................................. 27 2 1 6.00 6 6
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTTT.................................................................................. 26 2 1 5.00 5 5
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATATT.................................................................................. 26 2 1 5.00 5 5
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCT...................................................................................... 22 1 1 5.00 5 5
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTTTTT................................................................................ 28 3 1 4.00 4 4
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTAT.................................................................................. 26 3 1 3.00 3 3
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATAT................................................................................... 25 1 1 3.00 3 3
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCA...................................................................................... 22 0 1 3.00 3 3
..........................................................................................AGGGCTGGAAGGATATATACA.............................................................................................................................. 21 0 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCTTT.................................................................................... 24 2 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATAAT.................................................................................. 26 3 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTTAT................................................................................. 27 2 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCAT..................................................................................... 23 0 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATCT................................................................................... 25 1 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCAAT.................................................................................... 24 2 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATAGT.................................................................................. 26 3 1 2.00 2 2
.................................................................................................................................TATGTCTTCTTCCCAGCCCCCATTTTT................................................................................. 27 3 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCGTTT................................................................................... 25 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCTAG.................................................................................... 24 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCAAAT................................................................................... 25 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCTAT..................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATATTTT................................................................................ 28 3 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCTCATT.................................................................................... 24 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTTTTTCT.............................................................................. 30 3 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCTTT..................................................................................... 23 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCAAGTT.................................................................................. 26 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCC....................................................................................... 21 0 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATA.................................................................................... 24 1 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCTTCT................................................................................... 25 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCTTGTGA................................................................................. 27 3 1 1.00 1 1
..........................................................................................AGGGCTGGAAGGATATATACAGTA........................................................................................................................... 24 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTTA.................................................................................. 26 2 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCGCAT..................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCATTATT................................................................................. 27 3 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCAAAA................................................................................... 25 3 1 1.00 1 1
.................................................................................................................................TATGTCTTCTTTCCAGCCCCCAGA.................................................................................... 24 2 1 1.00 1 1
..........................................................................................AGGGCTGGAAGGATATATACAA............................................................................................................................. 22 1 2 0.50 1 1

Anti-sense strand reads

ATGGTCGAAAGGAATTGGTTAATTAAATTAGTGTGGGTTCCAATCCTCTCTTTCCCTTCACCACTTATTGACGATGATTCACGGACCAGATCCCGACCTTCCTATATATGTCCGAGTTGTGACGGGGTCATACAGAAGAAAGGTCGGGGGTACAGAGGACACCTTCTAATATAATACGAGAAGGGTCATAAAGTAAAAGACAAGAAAGTCACTGGGAAAGACGTCCtCCtAAgAtgt

***********************************************************************(((((.((.(((....((((((((((((.((((((.(((........)))...))))))..))))))))))))))).))...)).)))...*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:52 AM