ID:

eca-mir-8950

 Coordinate:

chr23:49691515-49691659 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.8 -44.8 -44.8

Sense Strand Reads

TCTGTGGCCGTGCTCTCCCGCCTTGTCTGGAGAGCCTCGCCTCCCAAGTCTTCCCGGCTCTACTGACCTTTGGGTGCTTGCTTTGGGTAGTGAGAGCTCTCATTTGTCCTGGGGTAGTTGCAGGTTTATAGGCTACCCCAGTCTTCAGATACATGAGGCCTTTTTGCTCTGTGGTCCCATAGTCCTGTAGATGTGTTGCATCTGGTCAGGAGTGTTGGGAATGGCTCAGAGCAGGTGTTTGACGC

***************************************************************.(((...((((.(((......((((((.(((.((.(((((.(((((((((((((((...........)))))))))))......)))).)))))))))).))))))...)))))))..)))...********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGTC...................................... 28 1 1 14.00 14 14
..................................................................................................................................................................TTTGCTCTGTGGTCCCATAGTCCTGTAGACT.................................................... 31 2 1 7.00 7 7
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGTCT..................................... 29 2 1 4.00 4 4
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGTCA..................................... 29 1 1 4.00 4 4
.....................................................................................................................................................................GCTCTGTGGTCCCATAGTCCTGTAGACTT................................................... 29 2 1 3.00 3 3
..............................................................................TGCTTTGGGTAGTGAGAGCTCTCATT............................................................................................................................................. 26 0 1 3.00 3 3
............................................................TACTGACCTTTGGGTGCTTGCTTTGGGTA............................................................................................................................................................ 29 0 1 3.00 3 3
...............................................................................................................................................TTCAGATACATGAGGCCTTTTTGCTCTGT......................................................................... 29 0 1 2.00 2 2
.....................................................................................................................................................TACATGAGGCCTTTTTGCTCTGTGGTCCCA.................................................................. 30 0 1 2.00 2 2
.................................................................................................................................................................TTTTGCTCTGTGGTCCCATAGTCCTGTAGACTT................................................... 33 2 1 2.00 2 2
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGTCAGT................................... 31 2 1 2.00 2 2
....................................................................................................................................................................TGCTCTGTGGTCCCATAGTCCTGTAGACGT................................................... 30 1 1 2.00 2 2
..............................................................................TGCTTTGGGTAGTGAGAGCTCTCATTTGTC......................................................................................................................................... 30 0 1 2.00 2 2
....................................................................................GGGTAGTGAGAGCTCTCATTTGTCC........................................................................................................................................ 25 0 1 2.00 2 2
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGG........................................ 26 1 1 2.00 2 2
.................................................................................................................................................................TTTTGCTCTGTGGTCCCATAGTCC............................................................ 24 0 1 2.00 2 2
....................................................CCCGGCTCTACTGACCTTTGGGTGCTT...................................................................................................................................................................... 27 0 1 2.00 2 2
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGTCAGA................................... 31 2 1 2.00 2 2
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGT....................................... 27 1 1 2.00 2 2
...............................................................................................................................................TTCAGATACATGAGGCCTTTTTGCTCTGTGT....................................................................... 31 1 1 2.00 2 2
..................................................................................................................................................................TTTGCTCTGTGGTCCCATAGTCCTGTAGACTTT.................................................. 33 3 1 2.00 2 2
.............................................................................TTGCTTTGGGTAGTGAGAGCTCTCATT............................................................................................................................................. 27 0 1 2.00 2 2
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGA........................................ 26 2 1 2.00 2 2
.........................................................................................................................................................................TGTGGTCCCATAGTCCTGTAGACGTGTTGCA............................................. 31 1 1 1.00 1 1
...........................................................................................................................................................................................TAGACGTGTTGCATCTGGTCAGGAGTGTTT............................ 30 2 1 1.00 1 1
.................................................................................................................................................................................CATAGTCCTGTAGACGTGTTGCATCTGGTC...................................... 30 1 1 1.00 1 1
................................................TCTTCCCGGCTCTACTGACCTTTGGGTGC........................................................................................................................................................................ 29 0 1 1.00 1 1
.........................................TCCCAAGTCTTCCCGGCTCTACTGACCTTT.............................................................................................................................................................................. 30 0 1 1.00 1 1
...................................................TCCCGGCTCTACTGACCTTTGGGTGCTT...................................................................................................................................................................... 28 0 1 1.00 1 1
.....................................................................................................................................................TACATGAGGCCTTTTTGCTCTGTGGTCCCG.................................................................. 30 1 1 1.00 1 1
...........................................................................................................................................................................................TAGACGTGTTGCATCTGGTCAGGAGT................................ 26 1 1 1.00 1 1
..............................................................................................................................................................................TCCCATAGTCCTGTAGACGTGTTGCATCTGT........................................ 31 2 1 1.00 1 1
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGTCTT.................................... 30 3 1 1.00 1 1
...............................................................................................................................................TTCAGATACATGAGGCCTTTTTGCTCT........................................................................... 27 0 1 1.00 1 1
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGA....................................... 27 2 1 1.00 1 1
..........................................CCCAAGTCTTCCCGGCTCTACTGACCTTTGCTT.......................................................................................................................................................................... 33 2 1 1.00 1 1
....TGGCCGTGCTCTCCCGCCTTGTCTGGA...................................................................................................................................................................................................................... 27 0 1 1.00 1 1
....................................................................................................................................................................................AGTCCTGTAGACGTGTTGCATCTGGTT...................................... 27 2 1 1.00 1 1
.....................................................................................................................................................TGCATGAGGCCTTTTTGCTCTGTGGTCCCA.................................................................. 30 1 1 1.00 1 1
................................................................................................................................................TCAGATACATGAGGCCTTTTTGCTCT........................................................................... 26 0 1 1.00 1 1
............................................................TACTGACCTTTGGGTGCTTGCTTTGGGT............................................................................................................................................................. 28 0 1 1.00 1 1
.................................................................................................................................................................................CATAGTCCTGTAGACGTGTAGCATCTGGTCT..................................... 31 3 1 1.00 1 1
..................................................................................................................................................................TTTGCTCTGTGGTCCCATAGTCCTGTAGACA.................................................... 31 2 1 1.00 1 1
.................................................................................................................................................................TTTTGCTCTGTGGTCCCATAGTCCTGTAGA...................................................... 30 0 1 1.00 1 1
.........................................................................................................................................................................TGTGGTCCCATAGTCCTGTAGACGTG.................................................. 26 1 1 1.00 1 1
..................................................TTCCCGGCTCTACTGACCTTTTGGTGCTT...................................................................................................................................................................... 29 1 1 1.00 1 1
..........................................................................................TGAGAGCTCTCATTTGTCCTGGGGTAGTT.............................................................................................................................. 29 0 1 1.00 1 1
.................................................................................................................................................................TTTTGCTCTGTGGTCCCATAGTCCTGTA........................................................ 28 0 1 1.00 1 1
..............................................................................................................................................................CCTTTTTGCTCTGTGGTCCCATAGTC............................................................. 26 0 1 1.00 1 1
...................................................................................TGGGTAGTGAGAGCTCTCATTTGTCCT....................................................................................................................................... 27 0 1 1.00 1 1
................................................TCTTCCCGGCTCTACTGACCTTTGGGTGCTT...................................................................................................................................................................... 31 0 1 1.00 1 1
..............................................................................................................................................................................TCCCATAGTCCTGTAGACGTGTTGCATC........................................... 28 1 1 1.00 1 1
..........................................................................................TGAGAGCTCTCATTTGTCCTGGGA................................................................................................................................... 24 1 1 1.00 1 1
............................................................TACTGACCTTTGGGTGCTTGCTTTGGGTAT........................................................................................................................................................... 30 1 1 1.00 1 1
..............................................................................TGCTTTGGGTAGTGAGAGCTCTCGTT............................................................................................................................................. 26 1 1 1.00 1 1
...................................................TCCCGGCTCTACTGACCTTTGGGTGCTTGC.................................................................................................................................................................... 30 0 1 1.00 1 1
...........................................................................................................................................................................TGGTCCCATAGTCCTGTAGACGTGTTGCATC........................................... 31 1 1 1.00 1 1
..................................................TTCCCGGCTCTACTGACCTTTGGGTTA........................................................................................................................................................................ 27 2 1 1.00 1 1
...................................................TCCCGGCTCTACTGACCTTTGGGTGCT....................................................................................................................................................................... 27 0 1 1.00 1 1
...................................................................................................................................................................................TAGTCCTGTAGGCGTGTTGCATCTGGTCAGA................................... 31 3 1 1.00 1 1
...................................................................................................................................................................TTGCTCTGTGGTCCCATAGTCCTGTAGACGTT.................................................. 32 2 1 1.00 1 1
..................................................................................................................................................................TTTGCTCTGTGGTCCCATAGTCCTGTAGA...................................................... 29 0 1 1.00 1 1
...........................................................................................................................................................................................TAGACGTGTTGCATCTGGTCAGGAGTGTT............................. 29 1 1 1.00 1 1
...........................................................................................................................................................................................TAGACGTGTTGCGTCTGGTCAGGA.................................. 24 2 1 1.00 1 1
...................................................................................................................................................................................TAGTCCTGTAGACGTGTTGCATCTGGTCAGG................................... 31 1 1 1.00 1 1
................................................................................................................................................................TTTTTGCTCTGTGGTCCCATAGTCCTGTA........................................................ 29 0 1 1.00 1 1
.........................................................................................................................................................................TGTGGTCCCATAGTCCTGTAGACGTGTTGC.............................................. 30 1 1 1.00 1 1
...............................................................................................................................................TTCAGATACATGAGGCCTTTTTGCTCTGTG........................................................................ 30 0 1 1.00 1 1

Anti-sense strand reads

AGACACCGGCACGAGAGGGCGGAACAGACCTCTCGGAGCGGAGGGTTCAGAAGGGCCGAGATGACTGGAAACCCACGAACGAAACCCATCACTCTCGAGAGTAAACAGGACCCCATCAACGTCCAAATATCCGATGGGGTCAGAAGTCTATGTACTCCGGAAAAACGAGACACCAGGGTATCAGGACATCTACACAACGTAGACCAGTCCTCACAACCCTTACCGAGTCTCGTCCACAAACTGCG

**********************************************************.(((...((((.(((......((((((.(((.((.(((((.(((((((((((((((...........)))))))))))......)))).)))))))))).))))))...)))))))..)))...*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:53 AM