ID:

eca-mir-8948

 Coordinate:

chr23:50337973-50338095 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.7 -29.7 -29.7 -29.7

Sense Strand Reads

CTTTGTCCTTCTGAGGTGGGGGCTTGATCCTCCTTAATGTCCTAAAATAGCCCTCACCCCACTTAGACAGGGCATGTTCTTGGTGTTGGAAGCCAGGCCCGGAGTTGCCAGCACTGGCCTGGACTGTGGCTGACCTGGTCCTCCCTGAGCTGGGGAGAAGGGAGGGAGGTGCTTGGCCAACTGACAAGGAGGCAGGAGGTCCCCTGTGGGAGGACAGGAGGAC

***********************************************************.....((...(((......((.(((......(((((((.((((.((.....)).))))))))).)).......))).))....)))....))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................TAGACAGGGCATGTTCTTGGTGTTGGAAGT.................................................................................................................................. 30 1 1 3.00 3 3
.................................TTAATGTCCTAAAATAGCCCTCAACCC................................................................................................................................................................... 27 1 1 3.00 3 3
..........................................................................TGTTCTTGGTGTTGGAAGCCAGGCCCGGA........................................................................................................................ 29 0 1 2.00 2 2
..................................TAATGTCCTAAAATAGCCCTCAACCCACTT............................................................................................................................................................... 30 1 1 2.00 2 2
..................................TAATGTCCTAAAATAGCCCTCAACCC................................................................................................................................................................... 26 1 1 2.00 2 2
............................................................................TTCTTGGTGTTGGAAGCCAGGCCCGGAGT...................................................................................................................... 29 0 1 1.00 1 1
..............................TCCTTAATGTCCTAAAATAGCCCTCAACCC................................................................................................................................................................... 30 1 1 1.00 1 1
..............................TCCTTAATGTCCTAAAATAGCCCTCAACC.................................................................................................................................................................... 29 1 1 1.00 1 1
.............................................................................................................AGCACTGGCCTGGACTGTGGCTGACCT....................................................................................... 27 0 1 1.00 1 1
.......................................................................................................................TGGACTGTGGCTGACCTGGTCCTCCCTGAGAA........................................................................ 32 2 1 1.00 1 1
...................................................................................................CGGAGTTGCCAGCACTGGCCTGGACTGTGGCTCACC........................................................................................ 36 1 1 1.00 1 1
..................................TAATGTCCTAAAATAGCCCTCGACCC................................................................................................................................................................... 26 2 1 1.00 1 1
................................................................................TGGTGTTGGAAGCCAGGCCCGGAG....................................................................................................................... 24 0 1 1.00 1 1
..................................................................................................................TGGCCTGGACTGTGGCTGACCTGGTCAAT................................................................................ 29 3 1 1.00 1 1

Anti-sense strand reads

GAAACAGGAAGACTCCACCCCCGAACTAGGAGGAATTACAGGATTTTATCGGGAGTGGGGTGAATCTGTCCCGTACAAGAACCACAACCTTCGGTCCGGGCCTCAACGGTCGTGACCGGACCTGACACCGACTGGACCAGGAGGGACTCGACCCCTCTTCCCTCCCTCCACGAACCGGTTGACTGTTCCTCCGTCCTCCAGGGGACACCCTCCTGTCCTCCTG

************************************************************************.....((...(((......((.(((......(((((((.((((.((.....)).))))))))).)).......))).))....)))....))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:52 AM