ID:

eca-mir-8935-3

 Coordinate:

chr1:69174803-69174947 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.2
mature

  1. eca-mir-8935-1  chr1:69166522-69166545 -
  2. eca-mir-8935-2  chr1:69170722-69170745 -
  3. eca-mir-8935-3  chr1:69174923-69174946 -
  4. eca-mir-8935-4  chr1:69178971-69178994 -
  5. chrUn:89070440-89070463 -
  6. chrUn:89078718-89078741 -
  7. chrUn:91303357-91303380 -
star

  1. eca-mir-8935-1  chr1:69166484-69166512 -
  2. eca-mir-8935-2  chr1:69170684-69170712 -
  3. eca-mir-8935-3  chr1:69174885-69174913 -
  4. eca-mir-8935-4  chr1:69178933-69178961 -
  5. chrUn:89070402-89070430 -
  6. chrUn:89078680-89078708 -
  7. chrUn:91303320-91303348 -

Sense Strand Reads

CGGGGACGCCGCCTCTCGTCGGGACGTGTTGGTCTGCCGTCGGTCCTCCCGTCCCAGGCACGAGGCGGCGAACTCCCCCAAAGGCAGAGATTTTGGCACCTGCGTCCTCGGCTGCTGGGTCCGGCCCCAAGCAGGCACGCGGCCCGCAGGTGCCGGGCGAATGTCGGCGGAAAGCACTATGCTCACAGGGAAGGACGGCAGACGATGAGCGCGCACCAACCAGTGCCGCGCTCCGTGCTGAGCGG

************************************..(((((.(((..((.((.(((.((((((..((.(((((..((...))..)))...)).)).))).)))))).)).))..))).)))))...********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................................................................................................TCACAGGGAAGGACGGCAGACGATGAGCGC................................. 30 0 8 1.38 11 11
.........................................................................................................................................................................................CAGGGAAGGACGGCAGACGATGAGCGC................................. 27 0 8 0.50 4 4
..................................................................................................................................................................................................ACGGCAGACGATGAGCGCGCACCAACCAGT..................... 30 0 7 0.43 3 3
..................................................................................................................................................................................................ACGGCAGACGATGAGCGCGCACCAACCAG...................... 29 0 7 0.43 3 3
...................................................TCCCAGGCACGAGGCGGCGAACTC.......................................................................................................................................................................... 24 0 7 0.43 3 3
......................................................................................................................................................................................TCACAGGGAAGGACGGCAGACGATGAGC................................... 28 0 8 0.38 3 3
......................................................................................................................................................................................................CAGACGATGAGCGCGCACCAACCAGTGCCGAAAT............. 34 3 6 0.33 2 2
..........................TGTTGGTCTGCCGTCGGTCCTCCCGTC................................................................................................................................................................................................ 27 0 7 0.29 2 2
..................................TGCCGTCGGTCCTCCCGTCCCAGGCAC........................................................................................................................................................................................ 27 0 7 0.29 2 2
...................................................TCCCAGGCACGAGGCGGCGAACTCCCC....................................................................................................................................................................... 27 0 7 0.29 2 2
.............................TGGTCTGCCGTCGGTCCTCCCGTCCCAGGC.......................................................................................................................................................................................... 30 0 7 0.29 2 2
....................................................................................CAGAGATTTTGGCACCTGCGTCCTCGGCT.................................................................................................................................... 29 0 7 0.29 2 2
...............................................................................................................................................................AATGTCGGCGGAAAGCACTATGCTCAC........................................................... 27 0 8 0.25 2 2
.................................................................................................................................................................TGTCGGCGGAAAGCACTATGCTCACAGGA....................................................... 29 1 8 0.25 2 2
...........................................................ACGAGGCGGCGAACTCCCCCAAAGGCAGT............................................................................................................................................................. 29 1 6 0.17 1 1
...........................................................CCGAGGCGGCGAACTCCCCCAAAGGC................................................................................................................................................................ 26 1 6 0.17 1 1
...........................................................ACGAGGCGGCGAACTCCCCCAAAGG................................................................................................................................................................. 25 0 6 0.17 1 1
..............................................................................CAAAGGCAGAGATTTTGGCACCTGC.............................................................................................................................................. 25 0 6 0.17 1 1
...........................................................ACGAGGCGGCGAACTCCCCCAAAGGCAGAGAAA......................................................................................................................................................... 33 2 6 0.17 1 1
..............................................................AGGCGGCGAACTCCCCCAAAGGCAGAGA........................................................................................................................................................... 28 0 6 0.17 1 1
..............................................................AGGCGGCGAACTCCCCCAAAGGCAGAGAA.......................................................................................................................................................... 29 1 6 0.17 1 1
....................................................CCCAGGCACGAGGCGGCGAACTCCCCC...................................................................................................................................................................... 27 0 7 0.14 1 1
....................................................................................................TGCGTCCTCGGCTGCTGGGTCCGGCCAAT.................................................................................................................... 29 3 7 0.14 1 1
.......................................................................................AGATTTTGGCACCTGCGTCCTCGGCTG................................................................................................................................... 27 0 7 0.14 1 1
...................................................TCCCAGGCACGAGGCGGCGAACTCCCCT...................................................................................................................................................................... 28 1 7 0.14 1 1
............................TTGGTCTGCCGTCGGTCCTCCCGTCTT.............................................................................................................................................................................................. 27 2 7 0.14 1 1
..................TCGGGACGTGTTGGTCTGCCGTCGGTCC....................................................................................................................................................................................................... 28 0 7 0.14 1 1
...................................................TCCCAGGCACGAGGCGGCGAACTCCCCCA..................................................................................................................................................................... 29 0 7 0.14 1 1
....................................................CCCAGGCACGAGGCGGCGAACTCCCC....................................................................................................................................................................... 26 0 7 0.14 1 1
.............................................................................................TGGCACCTGCGTCCTCGGCTG................................................................................................................................... 21 0 7 0.14 1 1
..........................................................................................TTTTGGCACCTGCGTCCTCGGCTGC.................................................................................................................................. 25 0 7 0.14 1 1
...................................................TCCCAGGCACGAGGCGGCGAACTCCCCC...................................................................................................................................................................... 28 0 7 0.14 1 1
.....................................................CCAGGCACGAGGCGGCGAACTCCCAAT..................................................................................................................................................................... 27 3 7 0.14 1 1
......................................................................................GAGATTTTGGCACCTGCGTCCTCGGCTGC.................................................................................................................................. 29 0 7 0.14 1 1
....................................................CCCAGGCACGAGGCGGCGAACTCCCT....................................................................................................................................................................... 26 1 7 0.14 1 1
.....................................................CCAGGCACGAGGCGGCGAACTCCCCCAA.................................................................................................................................................................... 28 0 7 0.14 1 1
...................................................TCCCAGGCACGAGGCGGCGAACTCCCCCGA.................................................................................................................................................................... 30 1 7 0.14 1 1
.................................CTGCCGTCGGTCCTCCCGTCCCAGG........................................................................................................................................................................................... 25 0 7 0.14 1 1
..........................................................................................TTTTGGCACCTGCGTCCTCGGCTG................................................................................................................................... 24 0 7 0.14 1 1
..........................TGTTGGTCTGCCGTCGGTCCTCCCGT................................................................................................................................................................................................. 26 0 7 0.14 1 1
.......................................................................................AGATTTTGGCACCTGCGTCCTGGGCTG................................................................................................................................... 27 1 7 0.14 1 1
...........................................................ACGAGGCGGCGAACTCCCCCAAAGGA................................................................................................................................................................ 26 1 7 0.14 1 1
...................................................TCCCAGGCAAGAGGCGGCGGACTCCCC....................................................................................................................................................................... 27 2 7 0.14 1 1
.....................................................CCAGGCACGAGGCGGCGAACTTCCCCAA.................................................................................................................................................................... 28 1 7 0.14 1 1
..................................TGCCGTCGGTCCTCCCGTCCCAGGCACGAGG.................................................................................................................................................................................... 31 0 7 0.14 1 1
.........................................................................................................................................................................................CAGGGAAGGACGGCAGACGATGAGC................................... 25 0 8 0.13 1 1
....................................................................................................................................................................CGGCGGAAAGCACTATGCTCACAGGGAAGT................................................... 30 1 8 0.13 1 1
..................................................................................................................................................................................................ACGGCAGACGATGAGCGCGCACCAACT........................ 27 1 8 0.13 1 1
......................................................................................................................................................................................TCACAGGGAAGGACGGCAGACGATGAGCGA................................. 30 1 8 0.13 1 1
.......................................................................................................................................................................................CACAGGGAAGGACGGCAGACGATGAGC................................... 27 0 8 0.13 1 1
..........................................................................................................................................................................................AGGGAAGGACGGCAGACGATGAGCGC................................. 26 0 8 0.13 1 1
...............................................................................................................................................................AATGTCGGCGGAAAGCACTATGCTCACAGGGAAGGACG................................................ 38 0 8 0.13 1 1
.................................................................................................................................................................................TATGCTCACAGGGAAGGACGGCAGACT......................................... 27 1 8 0.13 1 1
......................................................................................................................................................................................TCACAGGGAAGGACGGCAGACGATGAGCGTTA............................... 32 3 8 0.13 1 1
......................................................................................................................................................................................TCACAGGGAAGGACGGCAGACGATGA..................................... 26 0 8 0.13 1 1
............................................................................................................................................................GCGAATGTCGGCGGAAAGCACTATGC............................................................... 26 0 8 0.13 1 1
.........................................................................................................................................................................................CAGGGAAGGACGGCAGACGATGAGCG.................................. 26 0 8 0.13 1 1
..............................................................................................................................................................................................AAGGACGGCAGACGATGAGCGCGCACC............................ 27 0 8 0.13 1 1
......................................................................................................................................................................................TCACAGGGAAGGACGGCAGACGATGAGCA.................................. 29 1 8 0.13 1 1
.................................................................................................................................................................TGTCGGCGGAAAGCACTATGCTCACAGGGAATT................................................... 33 2 8 0.13 1 1
.................................................................................................................................................................................TATGCTTACAGGGAAGGACGGCAGACGATGAGCGC................................. 35 1 8 0.13 1 1
.................................................................................................................................................................................TATGCTCACAGGGAAGGACGGCA............................................. 23 0 8 0.13 1 1
.........................................................................................................................................................................................CAGGGAAGGACGGCAGACGATGAGCGCT................................ 28 1 8 0.13 1 1
..............................................................................................................................................................GAATGTCGGCGGAAAGCACTATGCTCACA.......................................................... 29 0 8 0.13 1 1
.............................................................................................................................................................CGAATGTCGGCGGAAAGCACTATGCTCAC........................................................... 29 0 8 0.13 1 1

Anti-sense strand reads

GCCCCTGCGGCGGAGAGCAGCCCTGCACAACCAGACGGCAGCCAGGAGGGCAGGGTCCGTGCTCCGCCGCTTGAGGGGGTTTCCGTCTCTAAAACCGTGGACGCAGGAGCCGACGACCCAGGCCGGGGTTCGTCCGTGCGCCGGGCGTCCACGGCCCGCTTACAGCCGCCTTTCGTGATACGAGTGTCCCTTCCTGCCGTCTGCTACTCGCGCGTGGTTGGTCACGGCGCGAGGCACGACTCGCC

*********************************************************************************************************************..(((((.(((..((.((.(((.((((((..((.(((((..((...))..)))...)).)).))).)))))).)).))..))).)))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................AGGGGGTTTCCGTCTCTAAAACCGT................................................................................................................................................... 25 0 6 0.17 1 1
.................................................................................................................................................................................................CTGCCGTCTGCTACTCGCGCGTGGTT.......................... 26 0 8 0.13 1 1
..................................................................................................................................................................CAGCCGCCTTTCGTGATACGAGTGT.......................................................... 25 0 8 0.13 1 1

Generated: 09/01/2015 at 11:31 AM