ID:

eca-mir-8934-2

 Coordinate:

chr12:30929556-30929700 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-88.4 -88.4 -88.4 -88.4
mature

  1. eca-mir-8934-2  chr12:30929596-30929617 +
  2. chrUn:32048338-32048359 -
star

Sense Strand Reads

TCTCCCATCTCTCCCCAGTGTTCACAGTGCCCGTCATAAGGTTCCGTCACTGGTCCCCATGAAAACGGGCAGCCAAGGGGGCTCGGGGGGCCCCTGGAGGCCTCTGTACCCCACTTGAGAAAGGGTGGCAGTGGGGCAGCAGGCCTGGGGCCCCCAGGGCTCCACCGTTCCTGCTTGGGGACCTGAGAGGTGCACTGTGCTGGGTCTGGCTCTCCCAGGCCCGGAGCCGGGCTGTGTGCAAGAGG

***********************************.....((.((((((((((((((((........(((((....((((((((.(((((((((...(((((((((..(((((((..............)))))))))).))))))))))))))).)))).)).))....))))))))))))).....)))).))......)).....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................................CCCCTGGAGGCCTCTGTACCCC..................................................................................................................................... 22 0 2 5.00 10 10
..........................................................................................CCCCTGGAGGCCTCTGTACCCCA.................................................................................................................................... 23 0 2 2.50 5 5
..........................................................................................CCCCTGGAGGCCTCTGTACCCCACT.................................................................................................................................. 25 0 2 1.50 3 3
..........................................................................................CCCCTGGAGGCCTCTGTACC....................................................................................................................................... 20 0 2 1.00 2 2
..........................................................................................CCCCTGGAGGACTCTGTACCCCA.................................................................................................................................... 23 1 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACCCCAAA.................................................................................................................................. 25 2 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACCCCACTAAAT.............................................................................................................................. 29 3 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACCCCACTT................................................................................................................................. 26 0 2 0.50 1 1
...........................................................................................CCCTGGAGGCCTCTGTACCCC..................................................................................................................................... 21 0 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACCCCAC................................................................................................................................... 24 0 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACCCCACTA................................................................................................................................. 26 1 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACCCAAT................................................................................................................................... 24 2 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACCC...................................................................................................................................... 21 0 2 0.50 1 1
..........................................................................................CCCCTGGAGGCCTCTGTACG....................................................................................................................................... 20 1 3 0.33 1 1

Anti-sense strand reads

AGAGGGTAGAGAGGGGTCACAAGTGTCACGGGCAGTATTCCAAGGCAGTGACCAGGGGTACTTTTGCCCGTCGGTTCCCCCGAGCCCCCCGGGGACCTCCGGAGACATGGGGTGAACTCTTTCCCACCGTCACCCCGTCGTCCGGACCCCGGGGGTCCCGAGGTGGCAAGGACGAACCCCTGGACTCTCCACGTGACACGACCCAGACCGAGAGGGTCCGGGCCTCGGCCCGACACACGTTCTCC

***********************************.....((.((((((((((((((((........(((((....((((((((.(((((((((...(((((((((..(((((((..............)))))))))).))))))))))))))).)))).)).))....))))))))))))).....)))).))......)).....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:40 AM