ID:

eca-mir-8932-2

 Coordinate:

chr18:3400812-3400948 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-83.9 -83.9 -83.6 -83.6
mature

star

  1. eca-mir-8932-2  chr18:3400913-3400944 +
  2. chrUn:67495508-67495539 -

Sense Strand Reads

AGGGAGGCAAGTGGCCATAGCATGGACGTGTGGACCAGGCAGCTGGCCCAGACACTGCTGCTGCTCTCTGGGGAGCTGGCCGAGGTGGCTTGCCCGCGTGCCGGGGGCTCTGGCGCCAGTGGCACGTGTGCTGGGAGCGCCTGAGCCGTGGTGGCCGCACGGGCTGCCCAGAGGCGCCCGGGGGGCTTGTGCACACAGCGGGCCGGCTCTTGGCCCGGCCCCGCCCGGCTCCCCTCC

***********************************.......(((.......(((.(((.((((.(((((((.(((...(((..((((((...(((((.((((((.((((((((((..((...))..))))))).))).)))).))))))).)))))).)))))).))))))))).....)).)))..)))....)))*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................TGGACGTGTGGACCAGGCAGCTGGCCCAGA......................................................................................................................................................................................... 30 0 1 2.00 2 2
.................TAGCATGGACGTGTGGACCAGGCAGCTGGCCCCT.......................................................................................................................................................................................... 34 2 1 2.00 2 2
..................................................GACACTGCTGCTGCTCTCTGGGGAGCTGGC............................................................................................................................................................. 30 0 1 2.00 2 2
.................TAGCATGGACGTGTGGACCAGGCAGCTGGCCT............................................................................................................................................................................................ 32 1 1 1.00 1 1
......................TGGACGTGTGGACCAGGCAGCTGGCCCAGACTTC..................................................................................................................................................................................... 34 3 1 1.00 1 1
............GGCCATTGCCTGGACGTGTGGACCAGGC..................................................................................................................................................................................................... 28 2 1 1.00 1 1
...........TGGCCATAGCATGGACGTGTGGACCAGGCT.................................................................................................................................................................................................... 30 1 1 1.00 1 1
.................TAGCATGGACGTGTGGACCAGGCAGCTGGCACA........................................................................................................................................................................................... 33 1 1 1.00 1 1
......................TGGACGTGTGGACCAGGCAGCTGGCCCAGAC........................................................................................................................................................................................ 31 0 1 1.00 1 1
.................TAGCATGGACGTGTGGACCAGGCAGCTGGCCCAGAC........................................................................................................................................................................................ 36 0 1 1.00 1 1
.................TAGCATGGACGTGTGGACCAGGCAGCTGGCCC............................................................................................................................................................................................ 32 0 1 1.00 1 1
.................TAGCATGGACGTGTGGACCAGGCAGC.................................................................................................................................................................................................. 26 0 1 1.00 1 1
...........................................................................................................................................................................................TGTGCACACAGCGGGCCGGCTCTTGGCCC..................... 29 0 2 1.00 2 2
.............GCCATAGCATGGACGTGTGGACCAGGCA.................................................................................................................................................................................................... 28 0 1 1.00 1 1
..............................................................................................................................TGCGCTGGGAGCGCCTGAGCCATGGTGG................................................................................... 28 2 3 0.67 2 2
...........................................................................................................................................................................................TGTGCACACAGCGCGCCAGCTCTTGGCCC..................... 29 2 2 0.50 1 1
..........................................................................................................................................................................................TTGTGCACACAGCGGGCCGGCTCTTGGCCCT.................... 31 1 2 0.50 1 1
..........................................................................................................................................................................................TTGTGCACACAGCGGGCCGGCCCTTGGCTT..................... 30 3 2 0.50 1 1
.......................................................................................................................................................TGGCCGCACGGGCTGCCCAGAGGCGCCCGGGG...................................................... 32 0 2 0.50 1 1
.......................................................................................................................TGGCACGTGCGCTGGGAGCGCCTGAGC........................................................................................... 27 1 2 0.50 1 1
...........................................................................................................................................................................................TGTGCACACAGCGGGCCGGCTCTTGG........................ 26 0 2 0.50 1 1
..................................................................................................TGCCGGGGGCTCTGGCGCCAGTGGCAC................................................................................................................ 27 0 3 0.33 1 1

Anti-sense strand reads

TCCCTCCGTTCACCGGTATCGTACCTGCACACCTGGTCCGTCGACCGGGTCTGTGACGACGACGAGAGACCCCTCGACCGGCTCCACCGAACGGGCGCACGGCCCCCGAGACCGCGGTCACCGTGCACACGACCCTCGCGGACTCGGCACCACCGGCGTGCCCGACGGGTCTCCGCGGGCCCCCCGAACACGTGTGTCGCCCGGCCGAGAACCGGGCCGGGGCGGGCCGAGGGGAGG

***************************************.......(((.......(((.(((.((((.(((((((.(((...(((..((((((...(((((.((((((.((((((((((..((...))..))))))).))).)))).))))))).)))))).)))))).))))))))).....)).)))..)))....)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:47 AM