ID:

eca-mir-8923-2

 Coordinate:

chr19:2469417-2469541 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-58.4 -58.1 -58.0
mature

  1. eca-mir-8923-1  chr15:3407064-3407092 +
  2. eca-mir-8923-2  chr19:2469509-2469537 +
  3. chrUn:24759183-24759211 -
  4. chrUn:24862219-24862247 +
  5. chrUn:40113754-40113782 -
  6. chrUn:40167860-40167888 +
  7. chrUn:47376064-47376092 -
star

  1. eca-mir-8923-1  chr15:3406979-3407014 +
  2. eca-mir-8923-2  chr19:2469424-2469459 +
  3. chrUn:24759261-24759296 -
  4. chrUn:24862134-24862169 +
  5. chrUn:40113832-40113867 -
  6. chrUn:47376142-47376177 -

Sense Strand Reads

GCCTGAGGTGGAAATCCCAGCAGACCCCTTGGTCCCGTTGAGTCCAGTTCAGGACCTGGCACTTGGGCTGGGGCTGCTGATGGCACTCGCTCGGGGTCTGGAGCAGCTGAGGGCGCTGCTGCCGGTTCCAGCGCTAGAAGTGATGGCAGAAATAGAACTGGAGTTCCGTCCAGCTCCAGACGTGGCCCCTTTTCTGCCTCTGCACCTGGCAGAAGTGCTGGAGCT

******************************************(((((((((((........))))))))))).(((((.....((((((((.((((.((((((((((.......)))))).)))))))))))).....))))..)))))........((((((((......)))))))).......*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTCC...................................................... 29 0 7 1.71 12 12
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTC....................................................... 28 0 7 1.71 12 12
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGT........................................................ 27 0 7 1.29 9 9
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCATCC...................................................... 29 1 7 0.86 6 6
............................................................................................................................................TGATGGCAGAAATAGAACTGGAGTTCCGT........................................................ 29 0 7 0.71 5 5
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTT....................................................... 28 1 7 0.43 3 3
.........................................GTGCAGTTCAGGACCTGGCACTTGGGC............................................................................................................................................................. 27 1 8 0.38 3 3
............................................................................................................................................TGATGGCAGAAATAGAACTGGAGTTCCGTC....................................................... 30 0 7 0.29 2 2
...............................................................................................................................................TGGCAGAAATAGAACTGGAGTTCCGTC....................................................... 27 0 7 0.29 2 2
................................................................................TGGCACTCGCTCGGGGTCTGGAGCACC...................................................................................................................... 27 1 7 0.29 2 2
............................................................................................................................................TGATGGCAGAAATAGAACTGGAGTTC........................................................... 26 0 8 0.25 2 2
.........................................................GGCACTTGGGCTGGGGCTGCTGATGGCACTCGCTCG.................................................................................................................................... 36 0 6 0.17 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTCA...................................................... 29 1 7 0.14 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCATC....................................................... 28 1 7 0.14 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTAT...................................................... 29 2 7 0.14 1 1
..........................................................................................................................................AGTGATGGCAGAAATAGAACTGGAGA............................................................. 26 1 7 0.14 1 1
................................................................................TGGCACTCGCTCGGGGTCTGGAGC......................................................................................................................... 24 0 7 0.14 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCATCCA..................................................... 30 1 7 0.14 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTCCAGCA.................................................. 33 1 7 0.14 1 1
..........................................................................................................................................AGTGATGGCAGAAATAGAACTGGAGTTC........................................................... 28 0 7 0.14 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTAAA..................................................... 30 2 7 0.14 1 1
..........................................................................................................................................AGTGATGGCAGAAATAGAACTGGAGTTCC.......................................................... 29 0 7 0.14 1 1
............................................................................................................................................TGATGGCAGAAATAGAACTGGAGTTCCGTA....................................................... 30 1 7 0.14 1 1
.............................................................................TGATGGCACTCGCTCGGGGTCTGGA........................................................................................................................... 25 0 7 0.14 1 1
...........................................................................GCTGATGGCACTCGCTCGGGGTCTGGA........................................................................................................................... 27 0 7 0.14 1 1
..........................................................................TGCTGATGGCACTCGCTCGGGGTCTGGAG.......................................................................................................................... 29 0 7 0.14 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGCGTTCCGTCC...................................................... 29 1 7 0.14 1 1
..........................................................................................................................................AGTGATGGCAGAAATAGAACTGGAGTT............................................................ 27 0 7 0.14 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCGTATT..................................................... 30 3 7 0.14 1 1
..........................................................................................................................................AGTGATGGCAGAAATAGAACTGGAGTTCCGTA....................................................... 32 1 7 0.14 1 1
................................................................................TGGCACTCGCTCGGGGTCTGGAGCACCTGA................................................................................................................... 30 1 7 0.14 1 1
............................................................................................................................................TGATGGCAGAAATAGAACTGGAGTTCC.......................................................... 27 0 8 0.13 1 1
.................................CCCGTTGAGTCCAGTTCAGGACCTGGCACTTG................................................................................................................................................................ 32 0 8 0.13 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTC........................................................... 24 0 8 0.13 1 1
.....................................................................................CTCGCTCGGGGTCTGGAGCACCTGAG.................................................................................................................. 26 1 8 0.13 1 1
..............................................................................................................................................ATGGCAGAAATAGAACTGGAGTTCCG......................................................... 26 0 8 0.13 1 1
...................................................................................CACTCGCTCGGGGTCTGGAGCACCTGAGTT................................................................................................................ 30 3 8 0.13 1 1
.............................................................................................................................................GATGGCAGAAATAGAACTGGAGTTC........................................................... 25 0 8 0.13 1 1
......................................................................................TCGCTCGGGGTCTGGAGCACCTGAG.................................................................................................................. 25 1 8 0.13 1 1
..........................................TTAAGTTCAGGACCTGGCACT.................................................................................................................................................................. 21 2 15 0.07 1 1

Anti-sense strand reads

CGGACTCCACCTTTAGGGTCGTCTGGGGAACCAGGGCAACTCAGGTCAAGTCCTGGACCGTGAACCCGACCCCGACGACTACCGTGAGCGAGCCCCAGACCTCGTCGACTCCCGCGACGACGGCCAAGGTCGCGATCTTCACTACCGTCTTTATCTTGACCTCAAGGCAGGTCGAGGTCTGCACCGGGGAAAAGACGGAGACGTGGACCGTCTTCACGACCTCGA

***************************************(((((((((((........))))))))))).(((((.....((((((((.((((.((((((((((.......)))))).)))))))))))).....))))..)))))........((((((((......)))))))).......****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................TCTGGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 30 0 4 2.25 9 9
..............................CCAGGGCAACTCAGGTCAAGTCCT........................................................................................................................................................................... 24 0 9 2.22 20 20
................................................................................................................................................CCGTCTTTATCTTGACCTCAAGGCAGGT..................................................... 28 0 7 1.29 9 9
......................CTGGGGAACCAGGGTAACTCAGGTCAAGT.............................................................................................................................................................................. 29 1 4 1.00 4 4
.......................TGGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 28 0 4 0.75 3 3
.....................TCTGGGGAACCAGGGCAACTCAGGTCAA................................................................................................................................................................................ 28 0 4 0.75 3 3
........................GGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 27 0 7 0.71 5 5
.........................GGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 26 0 7 0.57 4 4
......................CTGGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 29 0 4 0.50 2 2
....................ATCTGGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 31 1 4 0.50 2 2
..............................CCAGGGCAACTCACGTCAAGTCCT........................................................................................................................................................................... 24 1 10 0.50 5 5
.....................................................................................................................CGACGGTCAAGGTCGCGATCTTCACT.................................................................................. 26 1 7 0.43 3 3
..............................CCAGGGTAACTCAGGTCAAGTCCT........................................................................................................................................................................... 24 1 9 0.33 3 3
........................AGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 27 1 7 0.29 2 2
...............................................................................................................................................TCCGTCTTTATCTTGACCTCAAGGCAGGT..................................................... 29 1 7 0.29 2 2
.....................TTTTGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 30 2 4 0.25 1 1
...............AGGTCGTCTGGGGAACCAGGGCAACTCA...................................................................................................................................................................................... 28 1 4 0.25 1 1
......................TTTGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 29 2 4 0.25 1 1
................TGTCGTCTGGGGAACCAGGGCAACTCAGGTCAC................................................................................................................................................................................ 33 2 4 0.25 1 1
..................................................................................CGTGAGCGAGCCCCAGACCTCGTCGACT................................................................................................................... 28 0 8 0.25 2 2
.....................TCTGGGGAACCAGGGCAAGTCAGGTCAAGT.............................................................................................................................................................................. 30 1 4 0.25 1 1
.......................TTGGGAACGAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 28 2 4 0.25 1 1
....................TTCTGGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 31 1 4 0.25 1 1
................TGTCGTCTGGGGAACCAGGGCAACTCAGGTCAA................................................................................................................................................................................ 33 1 4 0.25 1 1
...............................................................................................................................................ACCGTCTTTATCTTGACCTCAAGGCAGGT..................................................... 29 0 7 0.14 1 1
..........................................................................................................................................TCACTACCGTCTTTATCTTGACCTCAAGGCAGGT..................................................... 34 0 7 0.14 1 1
.............................................................................................................TCCCGCGACGACGGCCAAGGTCGCGATCTTC..................................................................................... 31 0 7 0.14 1 1
.....................................................................................................................CGACGGCCAAGGTCGCGATCTTCACTAC................................................................................ 28 0 7 0.14 1 1
................................................................................................................................................CCGTCTTTATCTTGACCTCAAGGCAGGTCG................................................... 30 0 7 0.14 1 1
..............................................................................CTACCGTGAGCGAGCCCCAGACCTCGT........................................................................................................................ 27 0 7 0.14 1 1
........................GGGGAACGAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 27 1 7 0.14 1 1
.......................................................................................................................TCCGCCGAGGTCGCGATCTTCACTACCGT............................................................................. 29 3 7 0.14 1 1
............................................................................................................................AAAGGTCGCGATCTTCACTACCGTCT........................................................................... 26 1 7 0.14 1 1
................................................................................................................................GTCGCGATCTTCACTACCGTCTTT......................................................................... 24 0 7 0.14 1 1
.............................................................................TCTACCGTGAGCGAGCCCCAGACCTCGT........................................................................................................................ 28 1 7 0.14 1 1
..................................................................................................................................CGCGATCTTCACTACCGTCTTTATCTT.................................................................... 27 0 7 0.14 1 1
..................................................................................................................CCACGACGACCGAGGTCGCGATCTTCACTACCGTC............................................................................ 35 3 7 0.14 1 1
................................................................................................................................................CCGTCTTTATCTTGACCTCAAAGCAGGT..................................................... 28 1 7 0.14 1 1
........................................................................................................................................TTTCACTACCGTCTTTATCTTGACCT............................................................... 26 1 7 0.14 1 1
.....................................................................................................................CGACGGCCAAGGTCGCGATCTTCACTA................................................................................. 27 0 7 0.14 1 1
................................................................................................................................................CCGTCTTTATCTTGACCTCAAGGCAGGTC.................................................... 29 0 7 0.14 1 1
.........................................................................................................................................TTCACTACCGTCTTTATCTTGACCT............................................................... 25 0 7 0.14 1 1
........................GGGGAACCAGGGCAACTCAGGTCAAGG.............................................................................................................................................................................. 27 1 7 0.14 1 1
...........................................................................................................................TCAAGGTCGCGATCTTCACTACCGTCTTT......................................................................... 29 1 7 0.14 1 1
.............................................................................................................TCCCGCGACGACGGCCAAGGTCGCGATCTT...................................................................................... 30 0 7 0.14 1 1
.................................................GTCCTGGACCGTGAACCCGACCCC........................................................................................................................................................ 24 0 7 0.14 1 1
...............................CAGGGCAACTCAGGTCAAGTCCTGGACCGT.................................................................................................................................................................... 30 0 8 0.13 1 1
.........................................................................................GAGCCCCAGACCTCGTCGACT................................................................................................................... 21 0 8 0.13 1 1
..................................GGCAACTCAGGTCAAGTCCTGGACCG..................................................................................................................................................................... 26 0 8 0.13 1 1
......................AAGGGGAACCAGGGCAACTCAGGTCAAGT.............................................................................................................................................................................. 29 2 8 0.13 1 1
..................................GGCAACTCAGGTCAAGTCCTGGACCGT.................................................................................................................................................................... 27 0 8 0.13 1 1
............................................................................................................................CGAGGTCGCGATCTTCACTACCGTCTT.......................................................................... 27 1 9 0.11 1 1

Generated: 09/01/2015 at 11:48 AM