ID:

eca-mir-8917

 Coordinate:

chr20:33720962-33721082 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-71.2 -70.8 -70.6

Sense Strand Reads

AGGTGGAGCCATCTGGTACCAGTGACCCTCCTGCCCCACGGGTGCTTCGGCCAATGCTGGTCGTCTCACAGTGGACAGAGTGAGAGAGTCAGCGGTTGGGGGGCAAGTCTCCAAGAGACTTGCCCTTCTTCCTCTGACCTTCCCAATCTCCTGCCACTCCAGGGTTCTGGGTTCTGTTGGGGGTCCCACCCCCCTGGTCTCCTGGGACCGGCCCAGTGTCG

***********************************((((..(((...((((((....))))))...))).))))......((.(((.(((((.((..((((((((((((((...))))))))))))))..)).))))).))).))((((((.((.((.((((....))))))...)).))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................................CTTGCCCTTCTTCCTCTGACCTTT............................................................................... 24 1 1 3.00 3 3
......................................................................................................................CTTGCCCTTCTTCCTCTGACCT................................................................................. 22 0 1 2.00 2 2
.......................................................................................................................TTGCCCTTCTTCCTCTGACC.................................................................................. 20 0 1 2.00 2 2
......................................................................................................................CTTGCCCTTCTTCCTCTGACC.................................................................................. 21 0 1 2.00 2 2
.......................................................................................................................TTGCCCTTCTTCCTCTGACCTTT............................................................................... 23 1 1 1.00 1 1
.......................................................................................................................TTGCCCTTCTTCCTATGACCTTT............................................................................... 23 2 1 1.00 1 1
.......................................................................................................................TTGCCCTTCTTCCTCTGACCTT................................................................................ 22 0 1 1.00 1 1
.......................................................................................................................TTGCCCTTCTTCCTCTGACCT................................................................................. 21 0 1 1.00 1 1
.......................................................................................................................TTGCCCTTCTTCCTCTGACCTTA............................................................................... 23 1 1 1.00 1 1
.......................................................................................................................TTGCCCTTCTTCCTCTGACCTAT............................................................................... 23 2 3 0.33 1 1
.......................................................................................................................TTGCCCTTCTTCCTCTGACCAA................................................................................ 22 2 6 0.17 1 1
......................................................................................................................CTTGCCATTGTTCCTCTGACCTTT............................................................................... 24 3 7 0.14 1 1

Anti-sense strand reads

TCCACCTCGGTAGACCATGGTCACTGGGAGGACGGGGTGCCCACGAAGCCGGTTACGACCAGCAGAGTGTCACCTGTCTCACTCTCTCAGTCGCCAACCCCCCGTTCAGAGGTTCTCTGAACGGGAAGAAGGAGACTGGAAGGGTTAGAGGACGGTGAGGTCCCAAGACCCAAGACAACCCCCAGGGTGGGGGGACCAGAGGACCCTGGCCGGGTCACAGC

***********************************((((..(((...((((((....))))))...))).))))......((.(((.(((((.((..((((((((((((((...))))))))))))))..)).))))).))).))((((((.((.((.((((....))))))...)).))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:50 AM