ID:

eca-mir-8915

 Coordinate:

chr20:25237783-25237925 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.0 -29.8 -29.8
mature

  1. chr20:23945906-23945931 +
  2. chr20:24164591-24164616 +
  3. eca-mir-8915  chr20:25237819-25237844 -
star

  1. chr6:42267058-42267086 -
  2. chr20:23945858-23945886 +
  3. chr20:24104189-24104217 -
  4. chr20:25224181-25224209 -
  5. eca-mir-8915  chr20:25237864-25237892 -
  6. chr20:26074491-26074519 +
  7. chr20:26094993-26095021 +
  8. chr20:26115227-26115255 -
  9. chr20:26132343-26132371 +

Sense Strand Reads

CTCTGAAAAGAGCCTTTGTTTTCCAGTGTTTCTAGCGAAGCTTCCTCACCCTTATTTGGCTTTGTGGTGGCTCTCGGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGCACACCGCCCTGCGCGATAGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCATTGCGGATGGCCAGCTGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAG

********************************************************************(((((.(((.((.((.((((((.((...(((.....(((.((((........)))).))).....))).)))))))))).)).)))..)))))...........*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................................................................................................................TTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAG 32 0 11 0.45 5 5
...................................................................................................................................TAGTCACTTTGCCCAGCAGCTTGTTG...................................................................................... 26 0 3 0.33 1 1
............................................................................................................................TGCGCGATAGTCACTTTGCCCAGCAGC............................................................................................ 27 0 3 0.33 1 1
...................................................................................................................................................................................................................TTCTTGTTGTCGCGGGCCGCGTTGCCCG.... 28 0 11 0.27 3 3
...................................................................................TGGGCAGCAGCACGGCCTGGATGTTGGGCTT................................................................................................................................. 31 2 9 0.11 1 1
...................................................................................TGGGCAGCAGCACGGCCTGGATGTTGGGC................................................................................................................................... 29 0 9 0.11 1 1
..................................................................................TTGGGCAGCAGCACGGCCTGGATGTTGGGCT.................................................................................................................................. 31 1 9 0.11 1 1
........................................................................CTCGGTCTTTTTGGGCAGCAGCACGGCCT.............................................................................................................................................. 29 1 9 0.11 1 1
................................................................................TCTTGGGCAGCAGCACGGCCTGGATGT........................................................................................................................................ 27 0 10 0.10 1 1
................................................................................................................................................................................................................GTCTTCTTGTTGTCGCGGGCCGCGTT......... 26 0 11 0.09 1 1
.................................................................................................................................................................................................................TCTTCTTGTTGTCGCGGGCCGCGTTGCCCG.... 30 0 11 0.09 1 1
..........................................................................................................................................................................TGCGGATGGCCAGCTGCAGGTGGCGCGGG............................................ 29 0 11 0.09 1 1
...................................................................................................................................................................................................................TTCTTGTTGTCGCGGGCCGCGCTGCCCGCCA. 31 1 11 0.09 1 1
............................................................................................................................................................................CGGATGGCCAGCTGCAGGTGGCGGGGAATG......................................... 30 2 11 0.09 1 1

Anti-sense strand reads

GAGACTTTTCTCGGAAACAAAAGGTCACAAAGATCGCTTCGAAGGAGTGGGAATAAACCGAAACACCACCGAGAGCCAGAAGAACCCGTCGTCGTGCCGGACCTACAACCCGTCGTGTGGCGGGACGCGCTATCAGTGAAACGGGTCGTCGAACAACTCGAGGAGCAGTAACGCCTACCGGTCGACGTCCACCGCGCCCTACTACGCGCAGAAGAACAACAGCGCCCGGCGCAACGGGCGGTC

***********************************************************************(((((.(((.((.((.((((((.((...(((.....(((.((((........)))).))).....))).)))))))))).)).)))..)))))...........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............TAAACAAAAGATCACAAAGATCGCTTCGAA........................................................................................................................................................................................................ 30 2 1 1.00 1 1
................TCAAAAGGTCACAAAGATCGCTTCGAA........................................................................................................................................................................................................ 27 1 1 1.00 1 1
......................................................................................................................................................GAACAACTCGAGGAGCAGTAACGCCT................................................................... 26 0 1 1.00 1 1
..........................................................CGAAACACCACCGAGAGCCAGAAGA................................................................................................................................................................ 25 0 2 0.50 1 1
..........................................................CGAAACACCACCGAGAGCCAGAAGAAC.............................................................................................................................................................. 27 0 2 0.50 1 1
....................................................................................................................................TCAGTGAAACGGGTCGTCGAACAACT..................................................................................... 26 0 3 0.33 1 1
....................................................................................TATGTCGTCGTGCCGGACCTACAACCCGT.................................................................................................................................. 29 3 9 0.22 2 2
..................................................................................AACCCGTCGTCGTGCCGGACCTACA........................................................................................................................................ 25 0 10 0.20 2 2
....................................................................CCGAGAGCCAGAAGAACCCGTCGT....................................................................................................................................................... 24 0 7 0.14 1 1
..................................................................................................................................................................................................CGCCCTACTACGCGCAGAAGAACAA........................ 25 0 14 0.14 2 2
....................................................................CCGAGAGCCAGAAGAACCCGTC......................................................................................................................................................... 22 0 7 0.14 1 1
...............................................................CACCACCGAGAGCCAGAAGAACCC............................................................................................................................................................ 24 0 7 0.14 1 1
................................................................ACCACCGAGAGCCAGAAGAACC............................................................................................................................................................. 22 0 7 0.14 1 1
.......................................................................AGAGCCAGAAGAACCCGTCGTCGTGCCGGACCT........................................................................................................................................... 33 0 8 0.13 1 1
.......................................................................................GTCGTCGTGCCGGACCTACAACCCGT.................................................................................................................................. 26 0 9 0.11 1 1
.......................................................................AGAGCCAGAAGAACCCGTCGTCGTGCC................................................................................................................................................. 27 0 9 0.11 1 1
......................................................................................CGTCGTCGTGCCGGACCTACAACCCGT.................................................................................................................................. 27 0 9 0.11 1 1
...........................................................................................................................................TGCGGGTCGTCGAACAACTCGAGAAGCA............................................................................ 28 3 9 0.11 1 1
......................................................................GAGAGCCAGAAGAACCCGTCGTCGTGCC................................................................................................................................................. 28 0 9 0.11 1 1
...................................................................................ACCCGTCGTCGTGCCGGACCTACAA....................................................................................................................................... 25 0 10 0.10 1 1
.............................................................................ATTTGAACCCGTCGTCGTGCCGGACCTACA........................................................................................................................................ 30 3 10 0.10 1 1
...............................................................................................................................................................................TTCCGGTCGACGTCCACCGCGCCCTACT........................................ 28 1 11 0.09 1 1
.................................................................................................................................................TCGTCGAACAACTCGAGAAGAAGGAACGCC.................................................................... 30 3 11 0.09 1 1
..............................................................................................................................................................................CTACCGGTCGACGTCCACCGCCCCTTACT........................................ 29 2 11 0.09 1 1
...................................................................................................................................................................................TGTCGACGTCCACCGCGCCCTA.......................................... 22 1 12 0.08 1 1
...................................................................................................................................................................................GGTCGACGTCCACCGCGCCCTACT........................................ 24 0 12 0.08 1 1
..................................................................................................................................................................................CGGTCGACGTCCACCGCGCCCTAC......................................... 24 0 12 0.08 1 1
..................................................................................................................................................................................................CGCCCGACTACGCGCAGAAGAACAACA...................... 27 1 14 0.07 1 1
...............................................................................................................................................................................................CCGCGCCCTACTACGCGCAGAAGAACA......................... 27 0 14 0.07 1 1
................................................................................................................................................................................................CGCGCCCTACTACGCGCAGAAGAACA......................... 26 0 14 0.07 1 1
...................................................................................................................................................................................................GCCCTACTACGCGCAGAAGAACAA........................ 24 0 14 0.07 1 1
................................................................................................................................................................................................AGCGCCCTACTACGCGCAGAAGAACAACA...................... 29 1 14 0.07 1 1
..................................................................................................................................................................................................CGCCCTACTACGCGCAGAAGAACAAC....................... 26 0 14 0.07 1 1
.....................................................................................................................................................................................................CCTACTACGCGCAGAAGAACAACAGC.................... 26 0 14 0.07 1 1
.....................................................................................................................................................................................................CTTACTAGGCGCAGAAGAACAACAGC.................... 26 2 15 0.07 1 1
....................................................................................................................................................................................................CCCTATTACGCGCAGAAGAACAACAGA.................... 27 2 16 0.06 1 1

Generated: 09/01/2015 at 11:51 AM