ID:

eca-mir-8910

 Coordinate:

chr20:39839804-39839948 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.4 -49.4 -49.2 -49.0

Sense Strand Reads

TGGCCACGATGATGCCGCCGATGACCAGGATCATGGTGCCGCCCAGGAGCTGGCTGTGCATCGACTGGCACTGTGGATAGTCGGCCTTGGTGAAGAACTGGGCACAGCCCACGATGTTGGTGGCCGTGAGCGTCGTGGCAGTGTCGTCCCACATGGCCAGCACACACAGGTCGTAGCCAGTCCCTGACACCAGGTTGTTGACCACGAAGGCCTTGTTGGAAGCTGGGATCATCCTGGGGTGGGTG

*********************************************...((.(((((((....((.(((((((((.(((...(((((....(((.....(((((...))))).....)))..))))).....)))...)))))))))))...))))))).)).......***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................TCGACTGGCACTGTGGATAGTCGGCCT.............................................................................................................................................................. 27 0 1 9.00 9 9
.............................................................................TAGTCGGCCTTGGTGAAGAACTGGGC.............................................................................................................................................. 26 0 1 8.00 8 8
........................................................TGCATCGACTGGCACTGTGGATAGTC................................................................................................................................................................... 26 0 1 4.00 4 4
............................................................TCGACTGGCACTGTGGATAGTCGGCCTTGGT.......................................................................................................................................................... 31 0 1 4.00 4 4
........................................................................................................................................................................................TGACACCAGGTTGTTGACCACGAAGGCCT................................ 29 0 1 3.00 3 3
.................................................................TGGCACTGTGGATAGTCGGCCTTGGT.......................................................................................................................................................... 26 0 1 3.00 3 3
.................................................................TGGCACTGTGGATAGTCGGCCTTGGTA......................................................................................................................................................... 27 1 1 2.00 2 2
..........................................................................................TGAAGAACTGGGCACAGCCCACGATGTTGG............................................................................................................................. 30 0 1 2.00 2 2
.................................................................TGGCACTGTGGATAGTCGGCCTTGGTT......................................................................................................................................................... 27 1 1 2.00 2 2
........................................................................................................................................................................................TGACACCAGGTTGTTGACCACGAAGGCCA................................ 29 1 1 2.00 2 2
............................................................TCGACTGGCACTGTGGATAGTCGGCCTT............................................................................................................................................................. 28 0 1 2.00 2 2
..............................................................................................................................TGAGCGTCGTGGCAGTGTCGTCCCACA............................................................................................ 27 0 1 2.00 2 2
.............................................................................TAGTCGGCCTTGGTGAAGAACTGGGAA............................................................................................................................................. 27 1 1 2.00 2 2
............................................................TCGACTGGCACTGTGGATAGTCGGCC............................................................................................................................................................... 26 0 1 2.00 2 2
..............................................................................................................................TGAGCGTCGTGGCAGTGTCGTCCCACATGGCC....................................................................................... 32 0 1 1.00 1 1
......................................................TGTGCATCGACTGGCACTGTGGATAGTCGG................................................................................................................................................................. 30 0 1 1.00 1 1
.........................................................................TGGATAGTCGGCCTTGGTGAAGAAC................................................................................................................................................... 25 0 1 1.00 1 1
............................................................TCGACTCGCACTGTGGATAATCGGCCT.............................................................................................................................................................. 27 2 1 1.00 1 1
......................................................TGTGCATCGACTGGCACTGTGGAT....................................................................................................................................................................... 24 0 1 1.00 1 1
........................................................................................................................................................................................TGACACCAGGTTGTTGACCACGAAG.................................... 25 0 1 1.00 1 1
......................................................................................TTGGTGAAGAACTGGGCACAGCCCACGATTT................................................................................................................................ 31 1 1 1.00 1 1
................................................................CTGGCACTGTGGATAGTCGGCCTTGGT.......................................................................................................................................................... 27 0 1 1.00 1 1
.............................................................................TAGTCGGCCTTGGTGAAGAACTGGGA.............................................................................................................................................. 26 1 1 1.00 1 1
.............................................................................TAGTCGGCCTTGGTGAAGAACTGGGCA............................................................................................................................................. 27 0 1 1.00 1 1
......................................................TGTGCATCGACTGGCACTGTGGATAGTCTTT................................................................................................................................................................ 31 3 1 1.00 1 1
......................................................................................TTGGTGAAGAACTGGGCACAGCCCACGATT................................................................................................................................. 30 1 1 1.00 1 1
............................................................TCGACTGGCACTGTGGATAGTAGGCCT.............................................................................................................................................................. 27 1 1 1.00 1 1
..................................................................GGCACTGTGGATAGTCGGCCTTGG........................................................................................................................................................... 24 0 1 1.00 1 1
.......................................................................TGTGGATAGTCGGCCTTGGTGAAGAAC................................................................................................................................................... 27 0 1 1.00 1 1
....................................................................CACTGTGGATAGTCGGCCTTGGTGAAGAAC................................................................................................................................................... 30 0 1 1.00 1 1
............................................................TCGACTGGCACTGTGGATAGTCGGCCTTGG........................................................................................................................................................... 30 0 1 1.00 1 1
.........................................................................................................................................................................................GACACCAGGTTGTTGACCACGAAGGCCT................................ 28 0 1 1.00 1 1
..............................................................GACTGGCACTGTGGATAGTCGGCCT.............................................................................................................................................................. 25 0 1 1.00 1 1
.....................................................CTGTGCATCGACTGGCACTGTGGATAGTCGT................................................................................................................................................................. 31 1 1 1.00 1 1
........................................................................................................................................................................................TGACACCAGGTTGTTGACCACGAAGGCTT................................ 29 1 1 1.00 1 1
............................................................TCGACTGGCACTGTGGATAGTCGGCCA.............................................................................................................................................................. 27 1 1 1.00 1 1
............................................................TCGACTGGCACTGTGGATAGTCGGCCTTGGA.......................................................................................................................................................... 31 1 1 1.00 1 1
............................................................TCGACTGGCACTGTGGATAATCGGCCTTGGA.......................................................................................................................................................... 31 2 1 1.00 1 1
...........................................................................................................................................................................................CACCAGGTTGTTGACCACGAAGGCCT................................ 26 0 1 1.00 1 1
....................................................................................................................................................................................................................TTGTTGGAAGCTGGGATCATCCTGGA....... 26 1 1 1.00 1 1
..........................................................................................TGAAGAACTGGGCACAGCCCACGATGTTGGTGGCC........................................................................................................................ 35 0 1 1.00 1 1
..................................................................GGCACTGTGGATAGTCGGCCTTGGTG......................................................................................................................................................... 26 0 1 1.00 1 1
................................................................................TCGGCCTTGGTGAAGAACTGGGCACAGCCCACTT................................................................................................................................... 34 2 1 1.00 1 1
....................................................................................................................................................................................................................TTGTTGGAAGCTGGGATCATCCTGGGTTT.... 29 2 1 1.00 1 1
.................................................................TGGCACTGTGGATAGTCGGCCTTGGTGAA....................................................................................................................................................... 29 0 1 1.00 1 1
.................................................................TGGCACTGTGGATAGTCGGCCTTGGTG......................................................................................................................................................... 27 0 1 1.00 1 1
......................................................TGTGCATCGACTGGCACTGTGGATAGTCGGTT............................................................................................................................................................... 32 2 1 1.00 1 1
....................................................................................................................................................................CACAGGTCGTAGCCAGTCCCTGACACT...................................................... 27 1 1 1.00 1 1
.................................................................TGGCACTGTGGATAGTCGGCCTTGGTGTT....................................................................................................................................................... 29 2 1 1.00 1 1
................................................................................TCGGCCTTGGTGAAGAACTGGGCACAGCCCACGAT.................................................................................................................................. 35 0 1 1.00 1 1
......................................................................................................................................................................................................TGACCACGAAGGCCTTGTTGGAAGCT..................... 26 0 1 1.00 1 1
.............................................................................TAGTCGGCCTTGGTGAAGAACTGGGCACAGCCC....................................................................................................................................... 33 0 1 1.00 1 1
.....................................................................ACTGTGGATAGTCGGCCTTGGTGAAT...................................................................................................................................................... 26 1 1 1.00 1 1
............................................................TCGACTGGCACTGTGGATAGTCGGCCTTGTA.......................................................................................................................................................... 31 2 1 1.00 1 1
.............................................................................TAGTCGGCCTTGGTGAAGAACTGGGCACG........................................................................................................................................... 29 1 1 1.00 1 1
....................................................................................................................................................................CACAGGTCGTAGCCAGTCCCTGACACCT..................................................... 28 1 1 1.00 1 1
.............................................................................TAGTCGGCCTTGGTGAAGAACTGGGCATT........................................................................................................................................... 29 2 1 1.00 1 1
........................................................TGCATCGACTGGCACTGTGGATAGTCGGCC............................................................................................................................................................... 30 0 1 1.00 1 1
............................................................TCGACTGGCACTGTGGATAGTCGGCCTTGGTT......................................................................................................................................................... 32 1 1 1.00 1 1
.......................................................................TGTGGATAGTCGGCCTTGGTGAA....................................................................................................................................................... 23 0 1 1.00 1 1
.........TGATGCCGCCGATGACCAGGATCATGGT................................................................................................................................................................................................................ 28 0 1 1.00 1 1
.................................................................TGGCACTGTGGATAGTCGGCCTTGGTGG........................................................................................................................................................ 28 1 1 1.00 1 1
....................................................................................................................................................................CACAGGTCGTAGCCAGTCCCTGACACC...................................................... 27 0 1 1.00 1 1

Anti-sense strand reads

ACCGGTGCTACTACGGCGGCTACTGGTCCTAGTACCACGGCGGGTCCTCGACCGACACGTAGCTGACCGTGACACCTATCAGCCGGAACCACTTCTTGACCCGTGTCGGGTGCTACAACCACCGGCACTCGCAGCACCGTCACAGCAGGGTGTACCGGTCGTGTGTGTCCAGCATCGGTCAGGGACTGTGGTCCAACAACTGGTGCTTCCGGAACAACCTTCGACCCTAGTAGGACCCCACCCAC

*****************************************************************************...((.(((((((....((.(((((((((.(((...(((((....(((.....(((((...))))).....)))..))))).....)))...)))))))))))...))))))).)).......********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:49 AM