ID:

eca-mir-8908n

 Coordinate:

chrX:116796896-116797040 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GTGGAGATTGAGCAGATTTGAGAATAGCTACATTGGTGTAGGGTGGATTGGGgtGtGttGggtggTGttGggtTGgTGTGTGgtGTGgggTtTTTtGGttGtgGgTtTTgtgtTtTtgTGTtTTtTGttGTGTGggTTTgTGttTtGgGTttTGgTgttgGtGTtgttgTTCTGTGGTGGCTGAAGTCCCTGAGGAAAATTTGTCCCAAATAAGTCATTCACTGGTCTATAATCCTTTATTCTAA

***************************************************************************.......................................................................................*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGT................................................................................................. 23 1 1 755.00 755 755
..........................................................................................TATTTAGGAAGACGCTATTCACA.................................................................................................................................... 23 0 1 88.00 88 88
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTA................................................................................................ 24 2 1 74.00 74 74
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAG.................................................................................................. 22 0 1 55.00 55 55
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGA................................................................................................. 23 1 1 51.00 51 51
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTT................................................................................................ 24 2 1 39.00 39 39
..........................................................................................TATTTAGGAAGACGCTATTCAC..................................................................................................................................... 22 0 1 26.00 26 26
..........................................................................................TATTTAGGAAGACGCTATTC....................................................................................................................................... 20 0 1 19.00 19 19
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTAA............................................................................................... 25 3 1 19.00 19 19
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGAA................................................................................................ 24 2 1 15.00 15 15
..........................................................................................TATTTAGGAAGACGCTATTCA...................................................................................................................................... 21 0 1 12.00 12 12
...............................................................................................................................AAGTGTGCCTTTCTGAATAGT................................................................................................. 21 1 1 11.00 11 11
...............................................................................................................................AAGTGTGCCTTTCTGAATAGTT................................................................................................ 22 2 3 9.33 28 28
..........................................................................................TATTTAGGAAGACGCTATT........................................................................................................................................ 19 0 1 8.00 8 8
.............................................................................................................................TGAAGTGTGCCTTTCTGAAT.................................................................................................... 20 0 1 8.00 8 8
..........................................................................................TATTTAGGAAGACGCTATTCACT.................................................................................................................................... 23 1 1 7.00 7 7
.............................................................................................................................TGAAGTGTGCCTGTCTGAATAGT................................................................................................. 23 2 1 6.00 6 6
...............................................................................................................................AAGTGTGCCTTTCTGAATAGTA................................................................................................ 22 2 2 4.00 8 8
.............................................................................................................................TGAAGTGTGCCGTTCTGAATAGT................................................................................................. 23 2 1 3.00 3 3
.............................................................................................................................TGAAGTGTGCCTTTCTGAATATT................................................................................................. 23 2 1 3.00 3 3
..............................................................................................................................GAAGTGTGCCTTTCTGAATAGT................................................................................................. 22 1 1 3.00 3 3
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTAT............................................................................................... 25 2 1 3.00 3 3
..........................................................................................TATTTAGGAAGACGCTATTCACAA................................................................................................................................... 24 1 1 3.00 3 3
.............................................................................................................................TGAAGTGTGCCTTTCTGAATACT................................................................................................. 23 2 1 2.00 2 2
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGG................................................................................................. 23 1 1 2.00 2 2
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTTA............................................................................................... 25 3 1 2.00 2 2
.............................................................................................................................TGAAGTGTGCCTTTCTGAAGAGT................................................................................................. 23 2 1 2.00 2 2
..........................................................................................TATTTAGGAAGACGCTATTCAG..................................................................................................................................... 22 1 1 2.00 2 2
..........................................................................................TATTTAGGAAGACGCTATTCACAG................................................................................................................................... 24 1 1 2.00 2 2
............................................................................................................................CTGAAGTGTGCCTTTCTGAATAGT................................................................................................. 24 2 1 2.00 2 2
.............................................................................................................................TGAAGTGTGCCTTTCTGAAAAGT................................................................................................. 23 2 2 1.50 3 3
..........................................................................................TATTTAGGAAGACGCTATTCATG.................................................................................................................................... 23 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGACTTTCTGAATAGT................................................................................................. 23 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGAAA............................................................................................... 25 3 1 1.00 1 1
.............................................................................................................................TGAAGTGCGCCTTTCTGAATAG.................................................................................................. 22 1 1 1.00 1 1
..........................................................................................TATTTAGCAAGACGCTATTCA...................................................................................................................................... 21 1 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTATTCAAA.................................................................................................................................... 23 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTTT............................................................................................... 25 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAC.................................................................................................. 22 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTAC............................................................................................... 25 3 1 1.00 1 1
..........................................................................................TATTTAGGAAGGCGCTATTCACAGA.................................................................................................................................. 25 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTATCTGAATAA.................................................................................................. 22 2 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTATTCACG.................................................................................................................................... 23 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAAGAGTA................................................................................................ 24 3 2 1.00 2 2
.............................................................................................................................TGAAGTGTGCCTTTCTGAA..................................................................................................... 19 0 1 1.00 1 1
..........................................................................................TATTTAGGAAGGCGCTATTCAC..................................................................................................................................... 22 1 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTATTCACATATACTGTATTAT....................................................................................................................... 36 0 1 1.00 1 1
.............................................................................................................................TGAACTGTGCCTTTCTGAATAGT................................................................................................. 23 2 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTATTCACAAT.................................................................................................................................. 25 2 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTATTGACA.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTATTAA...................................................................................................................................... 21 1 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTGTT........................................................................................................................................ 19 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTAAATAGT................................................................................................. 23 2 2 1.00 2 2
..............................................................................................................................GAAGTGTGCCTTTCTGAATAGA................................................................................................. 22 1 1 1.00 1 1
.............................................................................................................................TGAAGCGTGCCTTTCTGAATAGT................................................................................................. 23 2 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTATTCACATA.................................................................................................................................. 25 0 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGCA................................................................................................ 24 1 1 1.00 1 1
..........................................................................................CATTTAGGAAGACGCTATTCACA.................................................................................................................................... 23 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGC................................................................................................. 23 0 1 1.00 1 1
..........................................................................................TATTTAGGAGGACGCTATTCACA.................................................................................................................................... 23 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGAT................................................................................................ 24 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTG....................................................................................................... 17 0 1 1.00 1 1
...............................................................................................................................AAGTGTGCCTTTCTGAATAG.................................................................................................. 20 0 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATA................................................................................................... 21 0 1 1.00 1 1
.............................................................................................................................TGAAGTATGCCTTTCTGAATAGT................................................................................................. 23 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCCTTCTGAATAG.................................................................................................. 22 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGTAGA.............................................................................................. 26 3 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTCTCTGAATAGT................................................................................................. 23 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCATTCTGAATAGT................................................................................................. 23 2 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATAGATT............................................................................................... 25 2 1 1.00 1 1
..........................................................................................TATTTAGGAAGACGCTGTTCACA.................................................................................................................................... 23 1 1 1.00 1 1
.............................................................................................................................TGAAGTGTGCCTTTGTGAATAGTA................................................................................................ 24 3 3 0.67 2 2
............................................................................................................................CTGAAGTGTGCCTTTCTGAATAGAA................................................................................................ 25 3 2 0.50 1 1
.............................................................................................................................TGAAGTGTGCCTTTATGAATAGTA................................................................................................ 24 3 2 0.50 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATATA................................................................................................. 23 2 2 0.50 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAAA.................................................................................................... 20 1 2 0.50 1 1
.............................................................................................................................TGAAGTGTGCCTTTGTGAATAGT................................................................................................. 23 2 2 0.50 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAATACTA................................................................................................ 24 3 2 0.50 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTCAATAGTA................................................................................................ 24 3 2 0.50 1 1
..............................................................................................................................GAAGTGTGCCTTGCTGAATAGT................................................................................................. 22 2 2 0.50 1 1
.............................................................................................................................TGAAGTGTGCCTCTCTGAATAGTT................................................................................................ 24 3 3 0.33 1 1
.............................................................................................................................TGAAGTGTGCCTGTCTGAATAGTA................................................................................................ 24 3 3 0.33 1 1
..........................................................................................TATTTAGGAAGAAGATATTCACA.................................................................................................................................... 23 2 3 0.33 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAACAGTA................................................................................................ 24 3 3 0.33 1 1
.............................................................................................................................TGAAGTATGCCTTTCTGAATAGTA................................................................................................ 24 3 5 0.20 1 1
.................................................................................................................................GTGTGCCTTTCTGAATAGT................................................................................................. 19 1 5 0.20 1 1
.............................................................................................................................TGAAGTGTGCCTTTCTGAAGAGTT................................................................................................ 24 3 5 0.20 1 1
.............................................................................................................................TGAAGTGTGGCTTTCTGAAGAG.................................................................................................. 22 2 6 0.17 1 1
...............................................................................................................................AAGTGTGCCTTTCTGAATAGTTA............................................................................................... 23 3 7 0.14 1 1
......................................................................CCATGCTGTGTGCAGTGCCC........................................................................................................................................................... 20 0 7 0.14 1 1
...............................................................................................................................AAGTGTGCCTTTCTGAATAGTAA............................................................................................... 23 3 11 0.09 1 1
...............................................................................................................................CAGTGTGCCTTTCTGAATAGTA................................................................................................ 22 3 20 0.05 1 1

Anti-sense strand reads

CACCTCTAACTCGTCTAAACTCTTATCGATGTAACCACATCCCACCTAACCCgtCtCttCggtggACttCggtACgACACACgtCACgggAtAAAtCCttCtgCgAtAAgtgtAtAtgACAtAAtACttCACACggAAAgACttAtCgCAttACgAgttgCtCAtgttgAAGACACCACCGACTTCAGGGACTCCTTTTAAACAGGGTTTATTCAGTAAGTGACCAGATATTAGGAAATAAGATT

***********************************************************************************.......................................................................................*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM