ID:

eca-mir-8908l-1

 Coordinate:

chrX:115871267-115871411 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.6 -45.6 -45.6 -45.6
mature

  1. eca-mir-8908l-2  chrX:115855853-115855874 -
  2. eca-mir-8908l-1  chrX:115871314-115871335 -
star

  1. eca-mir-8908l-2  chrX:115855909-115855927 -
  2. eca-mir-8908l-1  chrX:115871370-115871388 -

Sense Strand Reads

GATTTGATGGGGAGAGTTATGAAATATACATTTGCGAGTGCAAGGCGGACTGTGCCCGTCCTCCATCTTGAGCCATTTTGTGTGCAGCGCCCTGCCCAGAATGGTTCCGATTACGTAGATAAAGTGTAGTCGGTGCCATCTGGGTAGAGCGATGCTCAACATGAACAACGTTTGGGGTGTCTTTCAGAGCAGGTGTGGGAGTGGAGATTGAGGTGTTGTGGAGCTTCCTGCCTTGACCTCAGGAG

**********************************************************.....((..................(((.(((.((((((((.(((((.(((((((((.........))))))))).))))))))))))).))).)))......))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGA................................................................................................. 22 0 2 1422.00 2844 2844
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAA................................................................................................ 23 1 2 93.50 187 187
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAT................................................................................................ 23 1 2 92.50 185 185
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGATT............................................................................................... 24 2 2 38.50 77 77
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGT................................................................................................. 22 1 2 37.50 75 75
..............................................................................................................................TAGTCGGTGCCATCTGGGTAG.................................................................................................. 21 0 2 28.50 57 57
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAT............................................................................................... 24 2 2 20.50 41 41
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAA............................................................................................... 24 2 2 16.50 33 33
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGG................................................................................................. 22 1 2 12.00 24 24
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAGA............................................................................................... 24 1 2 10.50 21 21
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGATA............................................................................................... 24 2 2 9.00 18 18
..............................................................................................................................TAGTCGGTGCCGTCTGGGTAGA................................................................................................. 22 1 2 8.00 16 16
..............................................................................................................................TAGTCGGTGCCATCTGGGTGGA................................................................................................. 22 1 2 8.00 16 16
..............................................................................................................................TAGTCGGTGCCATCGGGGTAGA................................................................................................. 22 1 2 5.00 10 10
..............................................................................................................................TAGTCGGTGCCAGCTGGGTAGA................................................................................................. 22 1 2 4.50 9 9
..............................................................................................................................TAGTCGGTGGCATCTGGGTAGA................................................................................................. 22 1 2 4.00 8 8
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGC................................................................................................. 22 1 2 4.00 8 8
..............................................................................................................................TAGTCGGTGCCATCTGGGTATT................................................................................................. 22 2 2 4.00 8 8
..............................................................................................................................TAGTCGGTGCCATCTGGGTA................................................................................................... 20 0 2 3.50 7 7
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAGT............................................................................................... 24 1 2 3.00 6 6
..............................................................................................................................TAGTCGGTGCCATCTGAGTAGA................................................................................................. 22 1 2 3.00 6 6
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAAT.............................................................................................. 25 3 2 3.00 6 6
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGTT................................................................................................ 23 2 2 3.00 6 6
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAGA.............................................................................................. 25 3 2 2.50 5 5
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGTA................................................................................................ 23 2 2 2.50 5 5
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAAA.............................................................................................. 25 3 2 2.50 5 5
..............................................................................................................................TAGTCGGTGCCATCTGGGTTGA................................................................................................. 22 1 2 2.50 5 5
..............................................................................................................................TAGTCGGTGCCATCTGGGGAGA................................................................................................. 22 1 2 2.50 5 5
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAATT.............................................................................................. 25 3 2 2.50 5 5
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAGT.............................................................................................. 25 3 2 2.50 5 5
..............................................................................................................................TAGTCGGTGCGATCTGGGTAGA................................................................................................. 22 1 2 2.00 4 4
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGTTT............................................................................................... 24 3 2 2.00 4 4
..............................................................................................................................TAGTCGGTGCCATCTGGGTCGA................................................................................................. 22 1 2 2.00 4 4
..............................................................................................................................TAGTCGGTGACATCTGGGTAGA................................................................................................. 22 1 2 2.00 4 4
..............................................................................................................................TAGTCGGTGCCATCTGGGTAT.................................................................................................. 21 1 2 1.50 3 3
..............................................................................................................................TAGTCGGTGCCATCTGGGTATA................................................................................................. 22 1 2 1.50 3 3
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAGAA.............................................................................................. 25 2 2 1.50 3 3
..............................................................................................................................TAGTCGGTGCCATCTGGGT.................................................................................................... 19 0 2 1.50 3 3
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAG............................................................................................... 24 2 2 1.50 3 3
.........................................................................CATTTTGTGTGCAGCGCCC......................................................................................................................................................... 19 0 2 1.50 3 3
..............................................................................................................................TAGTCGGTGCCAACTGGGTAGA................................................................................................. 22 1 2 1.50 3 3
..............................................................................................................................TAGTCGGTGGCATCTGGGTGGA................................................................................................. 22 2 2 1.50 3 3
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAGAA............................................................................................. 26 3 2 1.50 3 3
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGATC............................................................................................... 24 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGCAGA................................................................................................. 22 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGTCATCTGGGTAGA................................................................................................. 22 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCCTCTGGGTAGA................................................................................................. 22 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAAGA............................................................................................. 26 2 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCACCTGGGTAGA................................................................................................. 22 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGATAA.............................................................................................. 25 3 2 1.00 2 2
..............................................................................................................................TAGTCGGTGACATCTGGGTGGA................................................................................................. 22 2 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGATTT.............................................................................................. 25 3 2 1.00 2 2
..............................................................................................................................TGGTCGGTGCCATCTGGGTAGA................................................................................................. 22 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTAC.................................................................................................. 21 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCAGCTGGGTAGAA................................................................................................ 23 2 2 1.00 2 2
..............................................................................................................................GAGTCGGTGCCATCTGGGTAGA................................................................................................. 22 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCATCAGGGTAGA................................................................................................. 22 1 2 1.00 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGTAT............................................................................................... 24 3 3 0.67 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTAAGA................................................................................................ 23 3 3 0.67 2 2
..............................................................................................................................TAGTCGATGGCATCTGGGTAGA................................................................................................. 22 2 3 0.67 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTGGAA................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGACATCTGGGTTGA................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTGG.................................................................................................. 21 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTCGGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGTGTAAA................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTCGC................................................................................................. 22 2 2 0.50 1 1
................................................................................................................................GTCGGTCCCATCTGGGTAGAGC............................................................................................... 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATGTGGGTAG.................................................................................................. 21 1 2 0.50 1 1
..............................................................................................................................TAGTCGCTGCCATCTGGGTAGT................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCGTCTGGGTAGATT............................................................................................... 24 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTTGGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAGTA............................................................................................. 26 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCGTCTGGGTAGAT................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGACT............................................................................................... 24 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAATC.............................................................................................. 25 3 2 0.50 1 1
..............................................................................................................................TAGTCGGGGCCATCTGGGTAGA................................................................................................. 22 1 2 0.50 1 1
..........................................................................................CCTGCCCAGAATGGTTCCGAT...................................................................................................................................... 21 0 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAC............................................................................................... 24 1 2 0.50 1 1
...............................................................................................................................AGTCGGTGCCATCTGGGTAG.................................................................................................. 20 0 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGGT................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAAGT............................................................................................. 26 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGGA................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TCGTCGGTGCCATCTGGGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCGTCTGGGTAGT................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTTGAA................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTTCCATCTGGGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCGGGGTAGAGT............................................................................................... 24 2 2 0.50 1 1
.................................................................................................................................TCGGTGCCATCTGGGTAGAGCT.............................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTATAT................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGTCGTTGGCATCTGGGTAGA................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCAGCTGGGTAGT................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATGTGGGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAATT................................................................................................ 23 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTGGAT................................................................................................ 23 2 2 0.50 1 1
............................................................................................TGCCCAGAATGGTTCCGATTACG.................................................................................................................................. 23 0 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAATGT............................................................................................. 26 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGACATCTGGGTCGA................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCAGCTGGGTAGAT................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................GAGTCGGTGCCATCTGGGTAGAA................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGGCATCTGGGTTGAA................................................................................................ 23 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTGAAGA............................................................................................... 24 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTACA................................................................................................. 22 1 2 0.50 1 1
...............................................................................................................................AGTCGGTGCCATCTGGGTAGAA................................................................................................ 22 1 2 0.50 1 1
.............................................................................................................................CTAGTCGGTGCCATCTGGGTAGA................................................................................................. 23 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCCGGGTCGA................................................................................................. 22 2 2 0.50 1 1
................................................................................................................................GTCGGTGCCATCTGGGTAGAGCTA............................................................................................. 24 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGTTCGA............................................................................................. 26 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAAT................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTTGAT................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGTCGTTGCCATCTGGGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGTGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCCGGGTAGA................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGCTGACATCTGGGTAGA................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCAGCTGGGTAAA................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGGCATCTGGGTCGA................................................................................................. 22 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCAGCTGGGTAG.................................................................................................. 21 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGCAGATT............................................................................................... 24 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCAGCTGGGTAGATT............................................................................................... 24 3 2 0.50 1 1
............................................................................................TGCCCAGAATGGTTCCGATTAC................................................................................................................................... 22 0 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGG..................................................................................................... 18 0 2 0.50 1 1
..............................................................................................................................TAGTCGGTGACATCTGGGTAGAA................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................................TAGGCGGTGCCATCTGGGTAGA................................................................................................. 22 1 2 0.50 1 1
.............................................................................................................................CTAGTCGGTGCCATCTGGGTAG.................................................................................................. 22 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAG................................................................................................ 23 0 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCACCTGGGTAGATA............................................................................................... 24 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGGAG.................................................................................................. 21 1 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTGGAAA............................................................................................... 24 3 2 0.50 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGAAAGAT............................................................................................ 27 2 2 0.50 1 1
..............................................................................................................................TAGTCGGTGGCATCTGGGTAA.................................................................................................. 21 2 3 0.33 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGCA................................................................................................ 23 2 3 0.33 1 1
..............................................................................................................................TAGTCGCTGGCATCTGGGTAGA................................................................................................. 22 2 3 0.33 1 1
..............................................................................................................................TGGTCGGTGCCATCTGGGTAGATT............................................................................................... 24 3 3 0.33 1 1
..............................................................................................................................TAGTCGGTGCCATCTGGGTAGCTT............................................................................................... 24 3 3 0.33 1 1
..............................................................................................................................TAGTCGGTGTCATCTGGGTGGA................................................................................................. 22 2 3 0.33 1 1
..............................................................................................................................TAGTCGGTGACATCTGGGTGGAA................................................................................................ 23 3 3 0.33 1 1
..............................................................................................................................TAGTCGCTGACATCTGGGTAGAT................................................................................................ 23 3 5 0.20 1 1
..............................................................................................................................TAGTCGCTGGCATCTGGGTCGA................................................................................................. 22 3 5 0.20 1 1
..............................................................................................................................TAGTCGATGGCATCTGGGTGGA................................................................................................. 22 3 12 0.17 2 2
..............................................................................................................................TAGTCGGTGCCATCTGGGTTTT................................................................................................. 22 3 19 0.16 3 3
..............................................................................................................................TAGTCGTTGGCATCTGGGTTGA................................................................................................. 22 3 12 0.08 1 1

Anti-sense strand reads

CTAAACTACCCCTCTCAATACTTTATATGTAAACGCTCACGTTCCGCCTGACACGGGCAGGAGGTAGAACTCGGTAAAACACACGTCGCGGGACGGGTCTTACCAAGGCTAATGCATCTATTTCACATCAGCCACGGTAGACCCATCTCGCTACGAGTTGTACTTGTTGCAAACCCCACAGAAAGTCTCGTCCACACCCTCACCTCTAACTCCACAACACCTCGAAGGACGGAACTGGAGTCCTC

**********************************************************************************.....((..................(((.(((.((((((((.(((((.(((((((((.........))))))))).))))))))))))).))).)))......))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM