ID:

eca-mir-8908k-2

 Coordinate:

chrX:115858390-115858484 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.2
mature

  1. eca-mir-8908k-2  chrX:115858414-115858435 -
  2. eca-mir-8908k-1  chrX:115865164-115865185 -
star

  1. eca-mir-8908k-2  chrX:115858447-115858469 -
  2. eca-mir-8908k-1  chrX:115865197-115865219 -

Sense Strand Reads

GCATTGGACAGCGCGAAGGGGACTGGGCTGTTCCTCCACCTTGAGCCATGCAGTGTGCAGTGCCCTACCCAGAATGGTGCCGAATACTTAGTGTACATGTATTCGGCACCTTCTGGGTAGCGTAATGCTCAACACGAACGACGTTCCTATTGGCCTTATGACCAGTGTTTAGAGTGGAGCTTCAGGTGTTGTTGA

**************************************************..(((((((.(((.((((((((((.((((((((((((...........)))))))))))))))))))))).))).)))...)))).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................TATTCGGCACCTTCTGGGTAGC.......................................................................... 22 0 2 375.50 751 751
...................................................................................................TATTCGGCACCTTCTGGGTAGT.......................................................................... 22 1 2 135.00 270 270
...................................................................................................TATTCGGCACCTTCTGGGTAG........................................................................... 21 0 2 109.50 219 219
...................................................................................................TATTCGGCACCTTCTGGG.............................................................................. 18 0 2 38.00 76 76
...................................................................................................TATTCGGCACCTTCTGGGTAGA.......................................................................... 22 1 2 26.50 53 53
.................................................................TACCCAGAATGGTGCCGAATACT........................................................................................................... 23 0 2 22.50 45 45
...................................................................................................TATTCGGCACCTTCTGGGTAGCA......................................................................... 23 1 2 12.00 24 24
...................................................................................................TATTCGGCACCTTCTGGGTAGTT......................................................................... 23 2 2 11.00 22 22
...................................................................................................TATTCGGCACCTTCTGGGTAGTA......................................................................... 23 2 2 10.50 21 21
.................................................................TACCCAGAATGGTGCCGAATACTG.......................................................................................................... 24 1 2 7.50 15 15
.................................................................TGCCCAGAATGGTGCCGAATACT........................................................................................................... 23 1 2 5.50 11 11
.................................................................TACCCAGAATGGTGCCGAATAC............................................................................................................ 22 0 2 5.50 11 11
...................................................................................................TATTCGGCACCTTCTGGGTAGCT......................................................................... 23 1 2 5.50 11 11
....................................................................................................ATTCGGCACCTTCTGGGTAGC.......................................................................... 21 0 2 3.50 7 7
...................................................................................................TATTCGGCACCTTCTGGGTAGTAT........................................................................ 24 2 2 3.00 6 6
...................................................................................................TATTCGGCACCTTCTGGGTAGAA......................................................................... 23 2 3 3.00 9 9
...................................................................................................TATTCGGCACCTTCTGGGTAGCC......................................................................... 23 1 2 3.00 6 6
....................................................................................................ATTCGGCACCTTCTGGGTAG........................................................................... 20 0 2 3.00 6 6
...................................................................................................TATTCGGCACCTTCTGGGTAT........................................................................... 21 1 2 2.00 4 4
...................................................................................................TATTCGGCACCTTCTGGGTAGAT......................................................................... 23 2 2 2.00 4 4
...................................................................................................TATTCGGCACCTTCTGGGT............................................................................. 19 0 2 2.00 4 4
...................................................................................................TATTCGGCACCTTCTGGGTAGTAA........................................................................ 24 3 5 1.80 9 9
...................................................................................................TATTCGGCACCGTCTGGGTAGC.......................................................................... 22 1 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTCGC.......................................................................... 22 1 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTGGC.......................................................................... 22 1 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTAGTTT........................................................................ 24 2 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTAGTAGA....................................................................... 25 3 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTAGTATT....................................................................... 25 3 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTAGTTA........................................................................ 24 3 2 1.50 3 3
....................................................................................................ATTCGGCACCTTCTGGGTAGT.......................................................................... 21 1 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTAGG.......................................................................... 22 1 2 1.50 3 3
...................................................................................................TATTCGGCACCTTCTGGGTACT.......................................................................... 22 2 3 1.33 4 4
...................................................................................................TATTCGGCACCTTCTGGGTAGAAT........................................................................ 24 2 3 1.33 4 4
...................................................................................................TATTCGGCACCTTCTGGGTAGCCTT....................................................................... 25 2 2 1.00 2 2
...................................................................................................TATTCGGCACCTTCTGGGTAGCAAT....................................................................... 25 3 3 1.00 3 3
...................................................................................................TATTCGGCACCTTCTGGGTAGCAG........................................................................ 24 2 3 1.00 3 3
...................................................................................................TATTCGGCAACTTCTGGGTGGC.......................................................................... 22 2 2 1.00 2 2
....................................................................................................ATTCGGCACCTTCTGGG.............................................................................. 17 0 2 1.00 2 2
...................................................................................................TATTCGGCACCTTCTGGGTAGACT........................................................................ 24 2 2 1.00 2 2
...................................................................................................TATTCGGCACCTTCTGGGTAGCTT........................................................................ 24 1 2 1.00 2 2
...................................................................................................TATTCGGCACCTTCTGAGTAGT.......................................................................... 22 2 3 1.00 3 3
...................................................................................................TATTCGGCACCTTCTGGGTGGT.......................................................................... 22 2 2 1.00 2 2
........................................................................................TAGTGTACATGTATTCGGCACCTTCTGGGA............................................................................. 30 1 1 1.00 1 1
...................................................................................................TATTCGGAACCTTCTGGGTAGC.......................................................................... 22 1 2 1.00 2 2
....................................................................................................ATTCGGCACCTTCTGGGTAAC.......................................................................... 21 1 2 1.00 2 2
...................................................................................................TATTCGGCAGCTTCTGGGTAGC.......................................................................... 22 1 2 1.00 2 2
...................................................................................................TATTCGGCACCTTCTGGGTGG........................................................................... 21 1 2 1.00 2 2
.................................................................TGCCCAGAATGGTGCCGAATACTG.......................................................................................................... 24 2 2 1.00 2 2
...................................................................................................TATTCGGCACCGTCTGGGTAG........................................................................... 21 1 2 1.00 2 2
..................................................................................................CTATTCGGCACCTTCTGGGTAG........................................................................... 22 1 2 0.50 1 1
.................................................................TGCCCAGAATGGTGCCGAATAC............................................................................................................ 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGAGAA....................................................................... 25 2 2 0.50 1 1
...................................................................................................GATTCGGCACCTTCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTACTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGCAAAAA..................................................................... 27 3 2 0.50 1 1
...................................................................................................TATTCGGCACCTGCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
.................................................................TACCCAGAATGGTGCCGAATACTT.......................................................................................................... 24 0 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTTTATT..................................................................... 27 3 2 0.50 1 1
...................................................................................................TATTCGGCACTTTCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGCATT....................................................................... 25 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTTAAA...................................................................... 26 3 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGAAT........................................................................... 21 2 2 0.50 1 1
.................................................................TACCCAGAATGGTGCTGAATACT........................................................................................................... 23 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTTTT....................................................................... 25 3 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTAAA....................................................................... 25 3 2 0.50 1 1
...................................................................................................TATTCGGCACCTACTGGGTAGT.......................................................................... 22 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTGCGGGGTAGC.......................................................................... 22 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCGGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTGCTGGGTAGTT......................................................................... 23 3 4 0.50 2 2
...................................................................................................TATTCGGCACCTTCTGGGTAGCTG........................................................................ 24 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTTTAAT..................................................................... 27 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGCTA........................................................................ 24 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTTGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTTAA....................................................................... 25 3 2 0.50 1 1
....................................................................................................ATTCGGCACCTTCTGGGTAGCT......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGAGTAGC.......................................................................... 22 1 2 0.50 1 1
.....................................................................................................TTCGGCACCTTCTGGGTAG........................................................................... 19 0 2 0.50 1 1
....................................................................................................ATTCGGCACCTTCTGGGTAGCGCT....................................................................... 24 2 2 0.50 1 1
.................................................................TACCCAGAATGGTGCCGAATACTA.......................................................................................................... 24 1 2 0.50 1 1
...................................................................................................TATTCGACACCTTCTGGGTAGT.......................................................................... 22 2 2 0.50 1 1
.................................................................TGCCCAGAATGATGCCGAATACT........................................................................................................... 23 2 2 0.50 1 1
.................................................................TACCCAGAATGGTGCCGAATACTTA......................................................................................................... 25 0 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGCG......................................................................... 23 0 2 0.50 1 1
...................................................................................................TATCCGGCACCTTCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCAACTTCTGGGTTG........................................................................... 21 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGGTT........................................................................ 24 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCGGGGTAGA.......................................................................... 22 2 2 0.50 1 1
...................................................................................................TATTCGGCACGTTCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTAAAAT..................................................................... 27 3 2 0.50 1 1
.................................................................TACCCAGAACGGTGCCGAATACT........................................................................................................... 23 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTA............................................................................ 20 0 2 0.50 1 1
...................................................................................................TATTCGGCACCCTCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTGGCT......................................................................... 23 2 2 0.50 1 1
....................................................................................................ATTCGGCACCTTCTGGGTAGTAAA....................................................................... 24 3 2 0.50 1 1
.................................................................TGCCCAGAATGGTGCCGAAGACT........................................................................................................... 23 2 2 0.50 1 1
...................................................................................................TGTTCGGCACCTTCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTTTGGGTAG........................................................................... 21 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGAGA........................................................................ 24 2 2 0.50 1 1
...................................................................................................TATTCGGCACATTCTGGGTAGC.......................................................................... 22 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGGAGT.......................................................................... 22 2 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGTGT........................................................................ 24 1 2 0.50 1 1
...................................................................................................TATTCGGCACCTTCT................................................................................. 15 0 5 0.40 2 2
....................................................................................................ATTCGGCGCCTTCTGGGTAG........................................................................... 20 1 3 0.33 1 1
....................................................................................................ATTCGGCACCTTCTGGTTAG........................................................................... 20 1 3 0.33 1 1
....................................................................................................ATTCGGCACCTTCTGGGTACC.......................................................................... 21 1 3 0.33 1 1
...................................................................................................TATTCGGCACCTTCTGTGTAG........................................................................... 21 1 3 0.33 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGAACA....................................................................... 25 3 3 0.33 1 1
...................................................................................................TATTCGGCACCTGCTGGGTAGA.......................................................................... 22 2 3 0.33 1 1
.................................................................TGCCCAGAATGGTGCCGAATACTGT......................................................................................................... 25 3 3 0.33 1 1
.....................................................................................................TTCGGCACCTTCTGGGTAGT.......................................................................... 20 1 3 0.33 1 1
...................................................................................................TATTCGGCACCTTCTGTGTAGC.......................................................................... 22 1 3 0.33 1 1
...................................................................................................TATTCGGCATCTTCTGGGTAGTA......................................................................... 23 3 3 0.33 1 1
...................................................................................................TATTCGGCACCTTCTGGGTATT.......................................................................... 22 2 3 0.33 1 1
...................................................................................................TATTCGCCAACTTCTGGGTGGC.......................................................................... 22 3 4 0.25 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGAAC........................................................................ 24 3 4 0.25 1 1
...................................................................................................TATTCGGCACCTTCTGGGTATTAT........................................................................ 24 3 4 0.25 1 1
...................................................................................................TATTCGGCACCTTCTGGGTGGTA......................................................................... 23 3 4 0.25 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGAAA........................................................................ 24 3 4 0.25 1 1
...................................................................................................TATTCGGCACCTTCTGGGTAGAAG........................................................................ 24 3 5 0.20 1 1
...................................................................................................TATTCGCCAGCTTCTGGGTGGC.......................................................................... 22 3 8 0.13 1 1

Anti-sense strand reads

CGTAACCTGTCGCGCTTCCCCTGACCCGACAAGGAGGTGGAACTCGGTACGTCACACGTCACGGGATGGGTCTTACCACGGCTTATGAATCACATGTACATAAGCCGTGGAAGACCCATCGCATTACGAGTTGTGCTTGCTGCAAGGATAACCGGAATACTGGTCACAAATCTCACCTCGAAGTCCACAACAACT

***********************************************************..(((((((.(((.((((((((((.((((((((((((...........)))))))))))))))))))))).))).)))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:16 PM