ID:

eca-mir-8908k-1

 Coordinate:

chrX:115865120-115865254 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.2
mature

  1. eca-mir-8908k-2  chrX:115858414-115858435 -
  2. eca-mir-8908k-1  chrX:115865164-115865185 -
star

  1. eca-mir-8908k-2  chrX:115858447-115858469 -
  2. eca-mir-8908k-1  chrX:115865197-115865219 -

Sense Strand Reads

TTGGGAGAGGCACGAAACCTACATCGGACAGTGTGAAGGGGACTGGGCTGTTCCTCCACCTTGAGCCATGCAGTGTGCAGTGCCCTACCCAGAATGGTGCCGAATACTTAGTCTACATGTATTCGGCACCTTCTGGGTAGCGTAATGCTCAACACGAACGCTGTTCTTGTTGGCCTTATGACCGGTGTTTAGAGTGGAGCTTCAGGTGTTGTTGAGCTTCCTGCCTTGACCTCAG

**********************************************************************..(((((((.(((.((((((((((.((((((((((((...........)))))))))))))))))))))).))).)))...)))).******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................................................................TATTCGGCACCTTCTGGGTAGC.............................................................................................. 22 0 2 375.50 751 751
.......................................................................................................................TATTCGGCACCTTCTGGGTAGT.............................................................................................. 22 1 2 135.00 270 270
.......................................................................................................................TATTCGGCACCTTCTGGGTAG............................................................................................... 21 0 2 109.50 219 219
.......................................................................................................................TATTCGGCACCTTCTGGG.................................................................................................. 18 0 2 38.00 76 76
.......................................................................................................................TATTCGGCACCTTCTGGGTAGA.............................................................................................. 22 1 2 26.50 53 53
.....................................................................................TACCCAGAATGGTGCCGAATACT............................................................................................................................... 23 0 2 22.50 45 45
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCA............................................................................................. 23 1 2 12.00 24 24
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTT............................................................................................. 23 2 2 11.00 22 22
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTA............................................................................................. 23 2 2 10.50 21 21
.....................................................................................TACCCAGAATGGTGCCGAATACTG.............................................................................................................................. 24 1 2 7.50 15 15
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCT............................................................................................. 23 1 2 5.50 11 11
.....................................................................................TGCCCAGAATGGTGCCGAATACT............................................................................................................................... 23 1 2 5.50 11 11
.....................................................................................TACCCAGAATGGTGCCGAATAC................................................................................................................................ 22 0 2 5.50 11 11
........................................................................................................................ATTCGGCACCTTCTGGGTAGC.............................................................................................. 21 0 2 3.50 7 7
........................................................................................................................ATTCGGCACCTTCTGGGTAG............................................................................................... 20 0 2 3.00 6 6
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCC............................................................................................. 23 1 2 3.00 6 6
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAA............................................................................................. 23 2 3 3.00 9 9
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTAT............................................................................................ 24 2 2 3.00 6 6
.......................................................................................................................TATTCGGCACCTTCTGGGTAT............................................................................................... 21 1 2 2.00 4 4
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAT............................................................................................. 23 2 2 2.00 4 4
.......................................................................................................................TATTCGGCACCTTCTGGGT................................................................................................. 19 0 2 2.00 4 4
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTAA............................................................................................ 24 3 5 1.80 9 9
........................................................................................................................ATTCGGCACCTTCTGGGTAGT.............................................................................................. 21 1 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTGGC.............................................................................................. 22 1 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTTA............................................................................................ 24 3 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTAGG.............................................................................................. 22 1 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTTT............................................................................................ 24 2 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTAGA........................................................................................... 25 3 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTATT........................................................................................... 25 3 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTCGC.............................................................................................. 22 1 2 1.50 3 3
.......................................................................................................................TATTCGGCACCGTCTGGGTAGC.............................................................................................. 22 1 2 1.50 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTACT.............................................................................................. 22 2 3 1.33 4 4
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAAT............................................................................................ 24 2 3 1.33 4 4
.....................................................................................TGCCCAGAATGGTGCCGAATACTG.............................................................................................................................. 24 2 2 1.00 2 2
.......................................................................................................................TATTCGGAACCTTCTGGGTAGC.............................................................................................. 22 1 2 1.00 2 2
.......................................................................................................................TATTCGGCACCGTCTGGGTAG............................................................................................... 21 1 2 1.00 2 2
.......................................................................................................................TATTCGGCAGCTTCTGGGTAGC.............................................................................................. 22 1 2 1.00 2 2
.......................................................................................................................TATTCGGCACCTTCTGGGTGGT.............................................................................................. 22 2 2 1.00 2 2
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCAAT........................................................................................... 25 3 3 1.00 3 3
........................................................................................................................ATTCGGCACCTTCTGGGTAAC.............................................................................................. 21 1 2 1.00 2 2
.......................................................................................................................TATTCGGCACCTTCTGGGTGG............................................................................................... 21 1 2 1.00 2 2
.......................................................................................................................TATTCGGCACCTTCTGGGTAGACT............................................................................................ 24 2 2 1.00 2 2
.......................................................................................................................TATTCGGCACCTTCTGAGTAGT.............................................................................................. 22 2 3 1.00 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCAG............................................................................................ 24 2 3 1.00 3 3
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCCTT........................................................................................... 25 2 2 1.00 2 2
.......................................................................................................................TATTCGGCAACTTCTGGGTGGC.............................................................................................. 22 2 2 1.00 2 2
........................................................................................................................ATTCGGCACCTTCTGGG.................................................................................................. 17 0 2 1.00 2 2
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCTT............................................................................................ 24 1 2 1.00 2 2
.....................................................................................TGCCCAGAATGGTGCCGAAGACT............................................................................................................................... 23 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTTTAAT......................................................................................... 27 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAGA............................................................................................ 24 2 2 0.50 1 1
........................................................................................................................ATTCGGCACCTTCTGGGTAGCT............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACATTCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGGAGT.............................................................................................. 22 2 2 0.50 1 1
.........................................................................................................................TTCGGCACCTTCTGGGTAG............................................................................................... 19 0 2 0.50 1 1
........................................................................................................................ATTCGGCACCTTCTGGGTAGCGCT........................................................................................... 24 2 2 0.50 1 1
.....................................................................................TACCCAGAATGGTGCCGAATACTTA............................................................................................................................. 25 0 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTGCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATCCGGCACCTTCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................GATTCGGCACCTTCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGGTT............................................................................................ 24 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTA................................................................................................ 20 0 2 0.50 1 1
.......................................................................................................................TATTCGGCACTTTCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCGGGGTAGA.............................................................................................. 22 2 2 0.50 1 1
.....................................................................................TACCCAGAATGGTGCCGAATACTT.............................................................................................................................. 24 0 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCAAAAA......................................................................................... 27 3 2 0.50 1 1
.......................................................................................................................TATTCGGCACCCTCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTGT............................................................................................ 24 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTGCTGGGTAGTT............................................................................................. 23 3 4 0.50 2 2
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCTG............................................................................................ 24 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTTTATT......................................................................................... 27 3 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTACTGGGTAGT.............................................................................................. 22 2 2 0.50 1 1
........................................................................................................................ATTCGGCACCTTCTGGGTAGTAAA........................................................................................... 24 3 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTTTT........................................................................................... 25 3 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTTGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGAGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGACACCTTCTGGGTAGT.............................................................................................. 22 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTTAA........................................................................................... 25 3 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTTTGGGTAG............................................................................................... 21 1 2 0.50 1 1
.......................................................................................................................TGTTCGGCACCTTCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCTA............................................................................................ 24 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTGCGGGGTAGC.............................................................................................. 22 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTGGCT............................................................................................. 23 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTTAAA.......................................................................................... 26 3 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCG............................................................................................. 23 0 2 0.50 1 1
.......................................................................................................................TATTCGGCACGTTCTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.....................................................................................TGCCCAGAATGATGCCGAATACT............................................................................................................................... 23 2 2 0.50 1 1
.....................................................................................TACCCAGAATGGTGCCGAATACTA.............................................................................................................................. 24 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTACTGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCAACTTCTGGGTTG............................................................................................... 21 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAGAA........................................................................................... 25 2 2 0.50 1 1
.....................................................................................TACCCAGAACGGTGCCGAATACT............................................................................................................................... 23 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTAAAAT......................................................................................... 27 3 2 0.50 1 1
......................................................................................................................CTATTCGGCACCTTCTGGGTAG............................................................................................... 22 1 2 0.50 1 1
.....................................................................................TACCCAGAATGGTGCTGAATACT............................................................................................................................... 23 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGCATT........................................................................................... 25 2 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCGGGGTAGC.............................................................................................. 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGTAAA........................................................................................... 25 3 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGAAT............................................................................................... 21 2 2 0.50 1 1
.....................................................................................TGCCCAGAATGGTGCCGAATAC................................................................................................................................ 22 1 2 0.50 1 1
.......................................................................................................................TATTCGGCACCTTCT..................................................................................................... 15 0 5 0.40 2 2
.........................................................................................................................TTCGGCACCTTCTGGGTAGT.............................................................................................. 20 1 3 0.33 1 1
........................................................................................................................ATTCGGCACCTTCTGGGTACC.............................................................................................. 21 1 3 0.33 1 1
........................................................................................................................ATTCGGCGCCTTCTGGGTAG............................................................................................... 20 1 3 0.33 1 1
.......................................................................................................................TATTCGGCACCTTCTGTGTAG............................................................................................... 21 1 3 0.33 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAACA........................................................................................... 25 3 3 0.33 1 1
.......................................................................................................................TATTCGGCACCTTCTGTGTAGC.............................................................................................. 22 1 3 0.33 1 1
.......................................................................................................................TATTCGGCATCTTCTGGGTAGTA............................................................................................. 23 3 3 0.33 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTATT.............................................................................................. 22 2 3 0.33 1 1
.......................................................................................................................TATTCGGCACCTGCTGGGTAGA.............................................................................................. 22 2 3 0.33 1 1
.....................................................................................TGCCCAGAATGGTGCCGAATACTGT............................................................................................................................. 25 3 3 0.33 1 1
........................................................................................................................ATTCGGCACCTTCTGGTTAG............................................................................................... 20 1 3 0.33 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAAC............................................................................................ 24 3 4 0.25 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTGGTA............................................................................................. 23 3 4 0.25 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTATTAT............................................................................................ 24 3 4 0.25 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAAA............................................................................................ 24 3 4 0.25 1 1
.......................................................................................................................TATTCGCCAACTTCTGGGTGGC.............................................................................................. 22 3 4 0.25 1 1
.......................................................................................................................TATTCGGCACCTTCTGGGTAGAAG............................................................................................ 24 3 5 0.20 1 1
.......................................................................................................................TATTCGCCAGCTTCTGGGTGGC.............................................................................................. 22 3 8 0.13 1 1

Anti-sense strand reads

AACCCTCTCCGTGCTTTGGATGTAGCCTGTCACACTTCCCCTGACCCGACAAGGAGGTGGAACTCGGTACGTCACACGTCACGGGATGGGTCTTACCACGGCTTATGAATCAGATGTACATAAGCCGTGGAAGACCCATCGCATTACGAGTTGTGCTTGCGACAAGAACAACCGGAATACTGGCCACAAATCTCACCTCGAAGTCCACAACAACTCGAAGGACGGAACTGGAGTC

*******************************************************************************..(((((((.(((.((((((((((.((((((((((((...........)))))))))))))))))))))).))).)))...)))).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:16 PM