ID:

eca-mir-8908h

 Coordinate:

chrX:115879532-115879676 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.7 -42.6 -42.4
mature

star

  1. eca-mir-8908d-2  chrX:115854315-115854335 -
  2. eca-mir-8908g-2  chrX:115861133-115861153 -
  3. eca-mir-8908d-1  chrX:115867886-115867906 -
  4. eca-mir-8908g-1  chrX:115869772-115869792 -
  5. eca-mir-8908e  chrX:115874647-115874667 -
  6. eca-mir-8908h  chrX:115879580-115879600 -

Sense Strand Reads

CATGATCAGGACAGAGAATGAAGCTACTTTTGAGAATGTGAGGGCAACTGGGCAGATTCTCCACTTTGATCCATTCTGTGTGCAGTGCCCTATCCAGTAAGGTACTGATCACTTAGACTATATGGGATCAGTGCCTGTCTGGGTGGAGTAATGCTTGACAGGAACAACATTTGGGAGGGTCTTCAGACTGGTGCTGGGGATGAAATGCATGTTTCCTTGAGCTGCTAAACTTGAGCTCTAGACGT

***************************************************************************((((..(((.(((.((((((((..(((((((((((.((..........)))))))))))))..)))))))).))).)))...)))).*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................................TATCCAGTAAGGTACTGATCACT.................................................................................................................................... 23 0 1 253.00 253 253
..........................................................................................TATCCAGTAAGGTACTGATCAC..................................................................................................................................... 22 0 1 53.00 53 53
..........................................................................................TATCCAGTAAGGTACTGATC....................................................................................................................................... 20 0 1 30.00 30 30
..........................................................................................TATCCAGTAAGGTACTGAT........................................................................................................................................ 19 0 1 16.00 16 16
..........................................................................................TATCCAGTAAGGTACTGATCACTTAGACTATATGG........................................................................................................................ 35 0 1 14.00 14 14
..........................................................................................TATCCAGTAAGGTACTGATCA...................................................................................................................................... 21 0 1 9.00 9 9
..........................................................................................TATCCAGTAAGGTACTGATCACTTAGACT.............................................................................................................................. 29 0 1 7.00 7 7
..........................................................................................TATCCAGTAAGGTACTGATCACTT................................................................................................................................... 24 0 1 6.00 6 6
..........................................................................................TATCCAGTAAGGTACTGATCACTTAGAC............................................................................................................................... 28 0 1 4.00 4 4
..........................................................................................TATCCAGTAAGGTACTGATCACA.................................................................................................................................... 23 1 1 4.00 4 4
..........................................................................................TATCCAGTAAGGTACTGATA....................................................................................................................................... 20 1 1 3.00 3 3
..........................................................................................TATCCAGTAAGGTACTGATCACTTAGACTATA........................................................................................................................... 32 0 1 3.00 3 3
..........................................................................................TATCCAGTAAGGTACTGATAACT.................................................................................................................................... 23 1 1 3.00 3 3
..............................................................................................................................ATCAGTGCCTGTCTGGGTGGAT................................................................................................. 22 1 6 2.67 16 16
..........................................................................................TATCCAGTAAGGTACTGATCACTA................................................................................................................................... 24 1 1 2.00 2 2
..........................................................................................TATCCAGTAAGGTACTGATGAC..................................................................................................................................... 22 1 1 2.00 2 2
..........................................................................................TATCCAGTAAGGTACTGATGACT.................................................................................................................................... 23 1 1 2.00 2 2
..........................................................................................TATCCAGTAAGGTACTGATCAT..................................................................................................................................... 22 1 1 2.00 2 2
..........................................................................................TATCCAGTAAGGTACTGATCACC.................................................................................................................................... 23 1 1 2.00 2 2
..........................................................................................TATCCAGTAAGGAACTGATCACT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCAG..................................................................................................................................... 22 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCACTTAGACTAT............................................................................................................................ 31 0 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTAGTGATCACT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATG....................................................................................................................................... 20 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCACTTT.................................................................................................................................. 25 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCAGA.................................................................................................................................... 23 2 1 1.00 1 1
..........................................................................................TATCCAGTAAGGCACTGATCACT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTAATCACT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCACTTAGACTATATGGT....................................................................................................................... 36 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCATT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCACAA................................................................................................................................... 24 2 1 1.00 1 1
..........................................................................................TATCCAGTAAGGAACTGATCAC..................................................................................................................................... 22 1 1 1.00 1 1
..........................................................................................TATCCAGTAAAGTACTGATCACT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTAATGATCACTTAGACTATAGGG........................................................................................................................ 35 2 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATTACT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGGACTGATCACT.................................................................................................................................... 23 1 1 1.00 1 1
..........................................................................................TATCCAGTAAGGTACTGATCACTTAGA................................................................................................................................ 27 0 1 1.00 1 1
.......................................................................CATTCTGTGTGCAGTGCCC........................................................................................................................................................... 19 0 8 0.88 7 7
..............................................................................................................................ATCAGTGCCTGTCTGGGTGGA.................................................................................................. 21 0 6 0.83 5 5
......................................................................CCATTCTGTGTGCAGTGCCC........................................................................................................................................................... 20 0 8 0.75 6 6
..............................................................................................CAGTAAGGTACTGATCACT.................................................................................................................................... 19 0 3 0.67 2 2
..........................................................................................TATCCGGTAAGGTACTGATCACATA.................................................................................................................................. 25 2 2 0.50 1 1
.............................................................................................................................GATCAGTGCCTGTCTGGGTGGA.................................................................................................. 22 0 6 0.33 2 2
...............................................................CTTTGATCCATTCTGTGTGCAGTGCCC........................................................................................................................................................... 27 0 3 0.33 1 1
..........................................................................................TATCCAGTAAGGTAGTGAT........................................................................................................................................ 19 1 3 0.33 1 1
..............................................................................................................................CTCAGTGCCTGTCTGGGTGGA.................................................................................................. 21 1 7 0.29 2 2
..............................................................................................CAGTAAGGGACTGATCACT.................................................................................................................................... 19 1 4 0.25 1 1
..............................................................................................................................ATCAGTGCCTGTGTGGGTGG................................................................................................... 20 1 6 0.17 1 1
.............................................................................................................................GATCAGTGCCTGTCTGGGTGGAA................................................................................................. 23 1 6 0.17 1 1
.............................................................................................................................GATCAGTGCCTGTCTGGGTGGAT................................................................................................. 23 1 6 0.17 1 1
.............................................................................................................................GATCAGTGCCTGTCTGGGTGG................................................................................................... 21 0 6 0.17 1 1
..............................................................................................................................ATCAGTGCCTGTCTGGGTGG................................................................................................... 20 0 6 0.17 1 1
..............................................................................................................................ATCAGTGCCTGTCTGGGTGT................................................................................................... 20 1 6 0.17 1 1
..............................................................................................................................ATCAGTGCCTGTCTGGGTGGAAC................................................................................................ 23 2 6 0.17 1 1
..............................................................................................................................ATCAGTGCCTGTCTGGG...................................................................................................... 17 0 7 0.14 1 1
......................................................................CCATTCTGTGTGCAGTGCCT........................................................................................................................................................... 20 1 8 0.13 1 1
..............................................................................................................................ATCAGTGCCTGTCTGGCTGGAT................................................................................................. 22 2 9 0.11 1 1
.........................................................................TTCTGTGTGCAGTGCCC........................................................................................................................................................... 17 0 9 0.11 1 1

Anti-sense strand reads

GTACTAGTCCTGTCTCTTACTTCGATGAAAACTCTTACACTCCCGTTGACCCGTCTAAGAGGTGAAACTAGGTAAGACACACGTCACGGGATAGGTCATTCCATGACTAGTGAATCTGATATACCCTAGTCACGGACAGACCCACCTCATTACGAACTGTCCTTGTTGTAAACCCTCCCAGAAGTCTGACCACGACCCCTACTTTACGTACAAAGGAACTCGACGATTTGAACTCGAGATCTGCA

***********************************************************************************((((..(((.(((.((((((((..(((((((((((.((..........)))))))))))))..)))))))).))).)))...)))).*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................GTCACGGGATAGGTAAT.................................................................................................................................................. 17 1 18 0.11 2 2

Generated: 09/01/2015 at 12:18 PM