ID:

eca-mir-8908g-2

 Coordinate:

chrX:115861091-115861233 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.2
mature

  1. eca-mir-8908g-2  chrX:115861171-115861193 -
  2. eca-mir-8908g-1  chrX:115869810-115869832 -
star

  1. eca-mir-8908d-2  chrX:115854315-115854335 -
  2. eca-mir-8908g-2  chrX:115861133-115861153 -
  3. eca-mir-8908d-1  chrX:115867886-115867906 -
  4. eca-mir-8908g-1  chrX:115869772-115869792 -
  5. eca-mir-8908e  chrX:115874647-115874667 -
  6. eca-mir-8908h  chrX:115879580-115879600 -

Sense Strand Reads

CAGTCTTGGGACAGAGATGAAAGGTACTTTTGACAATGTGAGGAGAACTGGGCAGATTCTCTACTTTGAGCCATTCTGTGTGCAGTGCCCTACCCAGTAAGGTACTGATCACTTACTTAGACTACATGTGATCAGTGCCTGTCTGGGTGGAGTAATGCTCTACAAGAACAACGTTTGGGAGGGTCTTCAGACTCCTCCTGGGAATGGAGATGGATGTGTCTGTAAGGTGCCTGCCTCCAACTC

***************************************************************************.((((.(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))..))))..***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................................TACCCAGTAAGGTACTGATCACT.................................................................................................................................. 23 0 2 111.50 223 223
..........................................................................................TACCCAGTAAGGTACTGATCAC................................................................................................................................... 22 0 2 84.50 169 169
..........................................................................................TACCCAGTAAGGTACTGATC..................................................................................................................................... 20 0 2 26.00 52 52
..........................................................................................TACCCAGTAAGGTACTGATCACA.................................................................................................................................. 23 1 2 11.50 23 23
..........................................................................................TACCCAGTAAGGTACTGATCA.................................................................................................................................... 21 0 2 6.00 12 12
..........................................................................................TACCCAGTAAGGTACTGAT...................................................................................................................................... 19 0 2 4.00 8 8
..........................................................................................TACCCAGTAAGGTACTGATCACTT................................................................................................................................. 24 0 2 3.00 6 6
..................................................................................................................................ATCAGTGCCTGTCTGGGTGGAT........................................................................................... 22 1 6 2.67 16 16
..........................................................................................TACCCAGTAAGGTACTGATCACC.................................................................................................................................. 23 1 2 2.50 5 5
..........................................................................................TACCCAGTAAGGTACTGATCT.................................................................................................................................... 21 1 2 2.50 5 5
..........................................................................................TACCCAGTAAGGTACTGATCAA................................................................................................................................... 22 1 2 2.00 4 4
..........................................................................................TACCCAGTAAGGTACTGATCAG................................................................................................................................... 22 1 2 1.00 2 2
..........................................................................................TACCCAGTAAGGTACTGATCAGT.................................................................................................................................. 23 1 2 1.00 2 2
..........................................................................................TACCCAGTAAGGTACTGATGACT.................................................................................................................................. 23 1 2 1.00 2 2
..........................................................................................GACCCAGTAAGGTACTGATCACT.................................................................................................................................. 23 1 2 1.00 2 2
..........................................................................................TACCCAGTAAGGTACTGA....................................................................................................................................... 18 0 2 1.00 2 2
..........................................................................................TACCCAGTAAGGGACTGATCACT.................................................................................................................................. 23 1 2 1.00 2 2
.......................................................................CATTCTGTGTGCAGTGCCC......................................................................................................................................................... 19 0 8 0.88 7 7
..................................................................................................................................ATCAGTGCCTGTCTGGGTGGA............................................................................................ 21 0 6 0.83 5 5
......................................................................CCATTCTGTGTGCAGTGCCC......................................................................................................................................................... 20 0 8 0.75 6 6
..........................................................................................TACCCAGTAAGGTACTGATA..................................................................................................................................... 20 1 3 0.67 2 2
..........................................................................................TACCCAGTAAGGTACTGATCTT................................................................................................................................... 22 2 3 0.67 2 2
..........................................................................................TACCCAGTAAGGTACTGATG..................................................................................................................................... 20 1 3 0.67 2 2
..............................................................................................CAGTAAGGTACTGATCACT.................................................................................................................................. 19 0 3 0.67 2 2
..........................................................................................TACCCAGTAAGGTACTGATAACT.................................................................................................................................. 23 1 3 0.67 2 2
..........................................................................................TACCCAGTAAGGTACTGATGAC................................................................................................................................... 22 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATCATT.................................................................................................................................. 23 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGGACTGATCAC................................................................................................................................... 22 1 2 0.50 1 1
..........................................................................................AACCCAGTAAGGTACTGATCAC................................................................................................................................... 22 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTGCTGATC..................................................................................................................................... 20 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATCATA.................................................................................................................................. 23 2 2 0.50 1 1
..........................................................................................TACCCAGTATGGTACTGATCACT.................................................................................................................................. 23 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATCACGAT................................................................................................................................ 25 3 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATCACTAGT............................................................................................................................... 26 3 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATCACATA................................................................................................................................ 25 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGGACTGATCATT.................................................................................................................................. 23 2 2 0.50 1 1
..........................................................................................TACCCAATAAGGTACTGATCACT.................................................................................................................................. 23 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATCAT................................................................................................................................... 22 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATCACG.................................................................................................................................. 23 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTAATCACT.................................................................................................................................. 23 1 2 0.50 1 1
.........................................................................................CTACCCAGTAAGGTACTGATCACT.................................................................................................................................. 24 0 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATTA.................................................................................................................................... 21 1 2 0.50 1 1
..........................................................................................TACCCAGTAAGGTACTGATGA.................................................................................................................................... 21 1 3 0.33 1 1
..........................................................................................TACCCAGTAAGGTACTGATGACAA................................................................................................................................. 24 3 3 0.33 1 1
..........................................................................................TACCCAGTAGGGTACTGATAACT.................................................................................................................................. 23 2 3 0.33 1 1
..........................................................................................TACCCAGTAAGGTACTGATCAAA.................................................................................................................................. 23 2 3 0.33 1 1
..........................................................................................TACCCAGTAAGGTACTGATAAC................................................................................................................................... 22 1 3 0.33 1 1
.................................................................................................................................GATCAGTGCCTGTCTGGGTGGA............................................................................................ 22 0 6 0.33 2 2
..................................................................................................................................CTCAGTGCCTGTCTGGGTGGA............................................................................................ 21 1 7 0.29 2 2
..............................................................................................CAGTAAGGGACTGATCACT.................................................................................................................................. 19 1 4 0.25 1 1
..................................................................................................................................ATCAGTGCCTGTCTGGGTGG............................................................................................. 20 0 6 0.17 1 1
..................................................................................................................................ATCAGTGCCTGTCTGGGTGT............................................................................................. 20 1 6 0.17 1 1
.................................................................................................................................GATCAGTGCCTGTCTGGGTGG............................................................................................. 21 0 6 0.17 1 1
..................................................................................................................................ATCAGTGCCTGTGTGGGTGG............................................................................................. 20 1 6 0.17 1 1
.................................................................................................................................GATCAGTGCCTGTCTGGGTGGAA........................................................................................... 23 1 6 0.17 1 1
.................................................................................................................................GATCAGTGCCTGTCTGGGTGGAT........................................................................................... 23 1 6 0.17 1 1
..................................................................................................................................ATCAGTGCCTGTCTGGGTGGAAC.......................................................................................... 23 2 6 0.17 1 1
..................................................................................................................................ATCAGTGCCTGTCTGGG................................................................................................ 17 0 7 0.14 1 1
......................................................................CCATTCTGTGTGCAGTGCCT......................................................................................................................................................... 20 1 8 0.13 1 1
..................................................................................................................................ATCAGTGCCTGTCTGGCTGGAT........................................................................................... 22 2 9 0.11 1 1
.........................................................................TTCTGTGTGCAGTGCCC......................................................................................................................................................... 17 0 9 0.11 1 1

Anti-sense strand reads

GTCAGAACCCTGTCTCTACTTTCCATGAAAACTGTTACACTCCTCTTGACCCGTCTAAGAGATGAAACTCGGTAAGACACACGTCACGGGATGGGTCATTCCATGACTAGTGAATGAATCTGATGTACACTAGTCACGGACAGACCCACCTCATTACGAGATGTTCTTGTTGCAAACCCTCCCAGAAGTCTGAGGAGGACCCTTACCTCTACCTACACAGACATTCCACGGACGGAGGTTGAG

*****************************************************************************.((((.(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))..))))..*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:16 PM