ID:

eca-mir-8908g-1

 Coordinate:

chrX:115869760-115869842 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.6
mature

  1. eca-mir-8908g-2  chrX:115861171-115861193 -
  2. eca-mir-8908g-1  chrX:115869810-115869832 -
star

  1. eca-mir-8908d-2  chrX:115854315-115854335 -
  2. eca-mir-8908g-2  chrX:115861133-115861153 -
  3. eca-mir-8908d-1  chrX:115867886-115867906 -
  4. eca-mir-8908g-1  chrX:115869772-115869792 -
  5. eca-mir-8908e  chrX:115874647-115874667 -
  6. eca-mir-8908h  chrX:115879580-115879600 -

Sense Strand Reads

TGACAATGTGAGGAGAACTGGGCAGATTCTCTACTTTGAGCCATTCTGTGTGCAGTGCCCTACCCAGTAAGGTACTGATCACTTACTTAGACTACATGTGATCAGTGCCTGTCTGGGTGGAGTAATGCTCTAAAAGAGCAACGTTTGGGAGGGTCTTCAGACTCCTCCTGGGAATGGAGATGG

*********************************************......(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))........*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................TACCCAGTAAGGTACTGATCACT.................................................................................................... 23 0 2 111.50 223 223
............................................................TACCCAGTAAGGTACTGATCAC..................................................................................................... 22 0 2 84.50 169 169
............................................................TACCCAGTAAGGTACTGATC....................................................................................................... 20 0 2 26.00 52 52
............................................................TACCCAGTAAGGTACTGATCACA.................................................................................................... 23 1 2 11.50 23 23
............................................................TACCCAGTAAGGTACTGATCA...................................................................................................... 21 0 2 6.00 12 12
............................................................TACCCAGTAAGGTACTGAT........................................................................................................ 19 0 2 4.00 8 8
............................................................TACCCAGTAAGGTACTGATCACTT................................................................................................... 24 0 2 3.00 6 6
....................................................................................................ATCAGTGCCTGTCTGGGTGGAT............................................................. 22 1 6 2.67 16 16
............................................................TACCCAGTAAGGTACTGATCT...................................................................................................... 21 1 2 2.50 5 5
............................................................TACCCAGTAAGGTACTGATCACC.................................................................................................... 23 1 2 2.50 5 5
............................................................TACCCAGTAAGGTACTGATCAA..................................................................................................... 22 1 2 2.00 4 4
............................................................GACCCAGTAAGGTACTGATCACT.................................................................................................... 23 1 2 1.00 2 2
............................................................TACCCAGTAAGGTACTGATCAG..................................................................................................... 22 1 2 1.00 2 2
............................................................TACCCAGTAAGGTACTGATCAGT.................................................................................................... 23 1 2 1.00 2 2
............................................................TACCCAGTAAGGGACTGATCACT.................................................................................................... 23 1 2 1.00 2 2
............................................................TACCCAGTAAGGTACTGATGACT.................................................................................................... 23 1 2 1.00 2 2
............................................................TACCCAGTAAGGTACTGA......................................................................................................... 18 0 2 1.00 2 2
.........................................CATTCTGTGTGCAGTGCCC........................................................................................................................... 19 0 8 0.88 7 7
....................................................................................................ATCAGTGCCTGTCTGGGTGGA.............................................................. 21 0 6 0.83 5 5
........................................CCATTCTGTGTGCAGTGCCC........................................................................................................................... 20 0 8 0.75 6 6
............................................................TACCCAGTAAGGTACTGATCTT..................................................................................................... 22 2 3 0.67 2 2
............................................................TACCCAGTAAGGTACTGATA....................................................................................................... 20 1 3 0.67 2 2
............................................................TACCCAGTAAGGTACTGATG....................................................................................................... 20 1 3 0.67 2 2
............................................................TACCCAGTAAGGTACTGATAACT.................................................................................................... 23 1 3 0.67 2 2
................................................................CAGTAAGGTACTGATCACT.................................................................................................... 19 0 3 0.67 2 2
............................................................TACCCAGTAAGGTACTGATCACTAGT................................................................................................. 26 3 2 0.50 1 1
...........................................................CTACCCAGTAAGGTACTGATCACT.................................................................................................... 24 0 2 0.50 1 1
............................................................TACCCAGTAAGGTACTAATCACT.................................................................................................... 23 1 2 0.50 1 1
............................................................TACCCAGTAAGGTGCTGATC....................................................................................................... 20 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATCACG.................................................................................................... 23 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATGAC..................................................................................................... 22 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATCATA.................................................................................................... 23 2 2 0.50 1 1
............................................................TACCCAGTAAGGGACTGATCAC..................................................................................................... 22 1 2 0.50 1 1
............................................................AACCCAGTAAGGTACTGATCAC..................................................................................................... 22 1 2 0.50 1 1
............................................................TACCCAATAAGGTACTGATCACT.................................................................................................... 23 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATCAT..................................................................................................... 22 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATCACGAT.................................................................................................. 25 3 2 0.50 1 1
............................................................TACCCAGTATGGTACTGATCACT.................................................................................................... 23 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATCACATA.................................................................................................. 25 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATCATT.................................................................................................... 23 1 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATTA...................................................................................................... 21 1 2 0.50 1 1
............................................................TACCCAGTAAGGGACTGATCATT.................................................................................................... 23 2 2 0.50 1 1
............................................................TACCCAGTAAGGTACTGATCAAA.................................................................................................... 23 2 3 0.33 1 1
...................................................................................................GATCAGTGCCTGTCTGGGTGGA.............................................................. 22 0 6 0.33 2 2
............................................................TACCCAGTAAGGTACTGATGACAA................................................................................................... 24 3 3 0.33 1 1
............................................................TACCCAGTAAGGTACTGATAAC..................................................................................................... 22 1 3 0.33 1 1
............................................................TACCCAGTAGGGTACTGATAACT.................................................................................................... 23 2 3 0.33 1 1
............................................................TACCCAGTAAGGTACTGATGA...................................................................................................... 21 1 3 0.33 1 1
....................................................................................................CTCAGTGCCTGTCTGGGTGGA.............................................................. 21 1 7 0.29 2 2
................................................................CAGTAAGGGACTGATCACT.................................................................................................... 19 1 4 0.25 1 1
....................................................................................................ATCAGTGCCTGTGTGGGTGG............................................................... 20 1 6 0.17 1 1
...................................................................................................GATCAGTGCCTGTCTGGGTGG............................................................... 21 0 6 0.17 1 1
....................................................................................................ATCAGTGCCTGTCTGGGTGT............................................................... 20 1 6 0.17 1 1
....................................................................................................ATCAGTGCCTGTCTGGGTGG............................................................... 20 0 6 0.17 1 1
...................................................................................................GATCAGTGCCTGTCTGGGTGGAT............................................................. 23 1 6 0.17 1 1
....................................................................................................ATCAGTGCCTGTCTGGGTGGAAC............................................................ 23 2 6 0.17 1 1
...................................................................................................GATCAGTGCCTGTCTGGGTGGAA............................................................. 23 1 6 0.17 1 1
....................................................................................................ATCAGTGCCTGTCTGGG.................................................................. 17 0 7 0.14 1 1
........................................CCATTCTGTGTGCAGTGCCT........................................................................................................................... 20 1 8 0.13 1 1
...........................................TTCTGTGTGCAGTGCCC........................................................................................................................... 17 0 9 0.11 1 1
....................................................................................................ATCAGTGCCTGTCTGGCTGGAT............................................................. 22 2 9 0.11 1 1

Anti-sense strand reads

ACTGTTACACTCCTCTTGACCCGTCTAAGAGATGAAACTCGGTAAGACACACGTCACGGGATGGGTCATTCCATGACTAGTGAATGAATCTGATGTACACTAGTCACGGACAGACCCACCTCATTACGAGATTTTCTCGTTGCAAACCCTCCCAGAAGTCTGAGGAGGACCCTTACCTCTACC

***********************************************......(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))........********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM