ID:

eca-mir-8908f-4

 Coordinate:

chrX:115868381-115868481 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-53.9 -53.1 -53.0
mature

  1. eca-mir-8908f-1  chrX:115854859-115854881 -
  2. eca-mir-8908f-2  chrX:115859801-115859823 -
  3. eca-mir-8908f-3  chrX:115866553-115866575 -
  4. eca-mir-8908f-4  chrX:115868439-115868461 -
star

Sense Strand Reads

GGGCTACATTGGAGAGGGTAAGTGGGATGGGGCAGGATCTACCACTTTAGCAGTGCTGTGTGCAGTGTCCTACTCAGAAAGGTACTGATCACTTAGAGGACAAGTAGTCACTGCCTTTCTGGGTGGACTGATGCTCAACAGGAAGAACCTGGGTGGTGGCTAGTAGCAGTGATGGAAGTGGAGCTGCAGGTATCCTTGAGC

***********************************...(((((((((........(((((.(((..((((.(((((((((((((.((((.((((.......)))).)))).)))))))))))))))))...))).)).))).........))))))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................TACTCAGAAAGGTACTGATCACT............................................................................................................ 23 0 4 5.75 23 23
......................................................................TACTCAGAAAGGTACTGATCAC............................................................................................................. 22 0 4 1.00 4 4
......................................................................TACTCAGAAAGGTACTGATGACT............................................................................................................ 23 1 4 0.50 2 2
......................................................................TACTCAGAAAGGTACTGATCA.............................................................................................................. 21 0 4 0.25 1 1

Anti-sense strand reads

CCCGATGTAACCTCTCCCATTCACCCTACCCCGTCCTAGATGGTGAAATCGTCACGACACACGTCACAGGATGAGTCTTTCCATGACTAGTGAATCTCCTGTTCATCAGTGACGGAAAGACCCACCTGACTACGAGTTGTCCTTCTTGGACCCACCACCGATCATCGTCACTACCTTCACCTCGACGTCCATAGGAACTCG

***********************************...(((((((((........(((((.(((..((((.(((((((((((((.((((.((((.......)))).)))).)))))))))))))))))...))).)).))).........))))))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:17 PM