ID:

eca-mir-8908d-1

 Coordinate:

chrX:115867856-115867974 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.5
mature

star

  1. eca-mir-8908d-2  chrX:115854315-115854335 -
  2. eca-mir-8908g-2  chrX:115861133-115861153 -
  3. eca-mir-8908d-1  chrX:115867886-115867906 -
  4. eca-mir-8908g-1  chrX:115869772-115869792 -
  5. eca-mir-8908e  chrX:115874647-115874667 -
  6. eca-mir-8908h  chrX:115879580-115879600 -

Sense Strand Reads

AGGGATGAAAGGTACTTTTGAAAATGTGAGGAGAACTGGGCAGATTCTCTACTTTGAGCCATTCTGTGTGCAGTGCCCTACCCGGTAAGGTACTGATCACTTACTTAGACTACATGTGATCAGTGCCTGTCTGGGTGGAGTAATGCTCTACAAGAGCAACGTTTGGGAGGGTCTTCAGACTCCTCCTGGGAATGGAGATGGATGTGTCTGTAAGGTGCC

***************************************************************.((((.(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))..))))..***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................TACCCGGTAAGGTACTGATCACT...................................................................................................................... 23 0 1 5005.00 5005 5005
..............................................................................TACCCGGTAAGGTACTGATCAC....................................................................................................................... 22 0 1 1198.00 1198 1198
..............................................................................TACCCGGTAAGGTACTGATC......................................................................................................................... 20 0 1 215.00 215 215
..............................................................................TACCCGGTAAGGTACTGATCACA...................................................................................................................... 23 1 1 189.00 189 189
..............................................................................TACCCGGTAAGGTACTGATCA........................................................................................................................ 21 0 1 85.00 85 85
..............................................................................TACCCGGTAAGGTACTGATAACT...................................................................................................................... 23 1 1 44.00 44 44
..............................................................................TACCCGGTAAGGTACTGATCAGT...................................................................................................................... 23 1 1 33.00 33 33
..............................................................................TACCCGGTAAGGTACTGATCACTT..................................................................................................................... 24 0 1 32.00 32 32
..............................................................................TACCCGGTAAGGTACTGATCAAT...................................................................................................................... 23 1 1 31.00 31 31
..............................................................................TACCCGGTAAGGTACTGATGACT...................................................................................................................... 23 1 1 29.00 29 29
..............................................................................TACCCGGTAAGGTACTGATCAA....................................................................................................................... 22 1 1 27.00 27 27
..............................................................................TACCCGGTAAGGTACTGATCAAA...................................................................................................................... 23 2 1 21.00 21 21
..............................................................................TACCCGGTAAGGGACTGATCACT...................................................................................................................... 23 1 1 20.00 20 20
..............................................................................TACCCGGTAAGGTACTGATCT........................................................................................................................ 21 1 1 15.00 15 15
..............................................................................TACCCGGTAAGGTACTGATCATT...................................................................................................................... 23 1 1 13.00 13 13
..............................................................................TACCCGGTAAGGAACTGATCACT...................................................................................................................... 23 1 1 12.00 12 12
..............................................................................TACCCGGTAGGGTACTGATCACT...................................................................................................................... 23 1 1 12.00 12 12
..............................................................................TACCCGGTAAGGTACTGATAAC....................................................................................................................... 22 1 1 11.00 11 11
..............................................................................TACCCGGTAAGGTACTGATGAC....................................................................................................................... 22 1 1 11.00 11 11
..............................................................................TACCCGGTAAGGTACTGAT.......................................................................................................................... 19 0 1 11.00 11 11
..............................................................................TACCCGGTAAGGTACTGATCAT....................................................................................................................... 22 1 1 10.00 10 10
..............................................................................TACCCGGTAAGGTACTGATCACAA..................................................................................................................... 24 2 1 10.00 10 10
..............................................................................TACCCGGTAAGGTACTGATCACG...................................................................................................................... 23 1 1 7.00 7 7
.............................................................................CTACCCGGTAAGGTACTGATCACT...................................................................................................................... 24 0 1 7.00 7 7
..............................................................................TACCCGGTAAGGTACTGATCACCT..................................................................................................................... 24 1 1 7.00 7 7
..............................................................................TACCCGGTAAGGTACTGATCATA...................................................................................................................... 23 2 1 7.00 7 7
..............................................................................TACCCGGTAAGGTACTGATCACAAT.................................................................................................................... 25 3 1 7.00 7 7
..............................................................................TACCCGGTAAGGTACTGATCAG....................................................................................................................... 22 1 1 6.00 6 6
..............................................................................TACCCGGTAAGGCACTGATCACT...................................................................................................................... 23 1 1 6.00 6 6
..............................................................................TACCCGGTAGGGTACTGATGACT...................................................................................................................... 23 2 1 6.00 6 6
..............................................................................TACCCGGTAAGGTACTCATCACT...................................................................................................................... 23 1 1 6.00 6 6
..............................................................................TACCCGGTAGGGTACTGATAACT...................................................................................................................... 23 2 1 6.00 6 6
..............................................................................TACCCGGTAAGATACTGATCACT...................................................................................................................... 23 1 1 6.00 6 6
..............................................................................TACCCGGTAAGGTACTAATCACT...................................................................................................................... 23 1 1 5.00 5 5
..............................................................................TACCCGGTAAGGGACTGATCAAT...................................................................................................................... 23 2 1 5.00 5 5
..............................................................................TACCCGGTAAGGTACTGATTACT...................................................................................................................... 23 1 1 5.00 5 5
..............................................................................TACCCGGTAAGGGACTGATCAC....................................................................................................................... 22 1 1 4.00 4 4
..............................................................................TACCCGGTAAGGTACTGATCACTA..................................................................................................................... 24 1 1 4.00 4 4
..............................................................................TACCCGGTAAGGTACTGATCACC...................................................................................................................... 23 1 1 4.00 4 4
..............................................................................TACCCGGTACGGTACTGATGACT...................................................................................................................... 23 2 1 4.00 4 4
..............................................................................GACCCGGTAAGGTACTGATCACT...................................................................................................................... 23 1 1 4.00 4 4
..............................................................................TACCCGGTAAGGTACTGATGACA...................................................................................................................... 23 2 1 4.00 4 4
..............................................................................TACCCGGTACGGTACTGATAACT...................................................................................................................... 23 2 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTGATCAAGA..................................................................................................................... 24 3 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTGATCAAAT..................................................................................................................... 24 2 1 3.00 3 3
..................................................................................CGGTAAGGTACTGATCACT...................................................................................................................... 19 0 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTGATA......................................................................................................................... 20 1 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTGATGT........................................................................................................................ 21 2 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTGATTAC....................................................................................................................... 22 1 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTGATCACAT..................................................................................................................... 24 1 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTGATCAGA...................................................................................................................... 23 2 1 3.00 3 3
..............................................................................TACCCGATAAGGTACTGATCACT...................................................................................................................... 23 1 1 3.00 3 3
..............................................................................TACCCGCTAGGGTACTGATCACT...................................................................................................................... 23 2 1 3.00 3 3
..............................................................................TACCCGGTAAGGTACTTATCACT...................................................................................................................... 23 1 1 3.00 3 3
......................................................................................................................ATCAGTGCCTGTCTGGGTGGAT............................................................................... 22 1 6 2.67 16 16
..............................................................................TACCCGGTAAGGTACTGATT......................................................................................................................... 20 1 1 2.00 2 2
..............................................................................TACCCGGTAAGGGACTGATCAGT...................................................................................................................... 23 2 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTCATCAC....................................................................................................................... 22 1 1 2.00 2 2
..............................................................................TACCCGGTAAGCTACTGATCACT...................................................................................................................... 23 1 1 2.00 2 2
..............................................................................TACCCGGTAGGGTACTGATTACT...................................................................................................................... 23 2 1 2.00 2 2
..............................................................................TACCCGCTAAGGTACTGATC......................................................................................................................... 20 1 1 2.00 2 2
..............................................................................TACCCGCTAGGGTACTGATAACT...................................................................................................................... 23 3 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATCACAAA.................................................................................................................... 25 2 1 2.00 2 2
.................................................................................CCGGTAAGGTACTGATCACT...................................................................................................................... 20 0 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATCACATT.................................................................................................................... 25 2 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATGC........................................................................................................................ 21 2 1 2.00 2 2
..............................................................................TGCCCGGTAAGGTACTGATCACT...................................................................................................................... 23 1 1 2.00 2 2
..............................................................................TACCCGGTAAGGTGCTGATCACT...................................................................................................................... 23 1 1 2.00 2 2
..............................................................................TACCCGGTATGGTACTGATCACT...................................................................................................................... 23 1 1 2.00 2 2
..............................................................................TACCCGGTAGGGTACTGATGAC....................................................................................................................... 22 2 1 2.00 2 2
..............................................................................TACCCGGTAATGTACTGATCACT...................................................................................................................... 23 1 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATCAAAA..................................................................................................................... 24 3 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATCACGA..................................................................................................................... 24 2 1 2.00 2 2
..............................................................................AACCCGGTAAGGTACTGATCACT...................................................................................................................... 23 1 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATCACCA..................................................................................................................... 24 2 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATCACTTTT................................................................................................................... 26 2 1 2.00 2 2
..............................................................................TACCCGGTAAGGTACTGATCACTTACTTAGAC............................................................................................................. 32 0 1 2.00 2 2
..............................................................................TCCCCGGTAAGGTACTGATCACT...................................................................................................................... 23 1 1 2.00 2 2
..............................................................................TACCCGGTAAGGTAATGATCACT...................................................................................................................... 23 1 2 1.50 3 3
..............................................................................TACCCGGTAGGGTACTGATCAC....................................................................................................................... 22 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGGACTGATCATA...................................................................................................................... 23 3 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATAACA...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAATAAT................................................................................................................... 26 3 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCACTCT.................................................................................................................... 25 2 1 1.00 1 1
..............................................................................TACCCGATACGGTACTGATCAC....................................................................................................................... 22 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGAACTGATCAC....................................................................................................................... 22 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCACTTA.................................................................................................................... 25 0 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATGA........................................................................................................................ 21 1 1 1.00 1 1
.................................................................................CCGGTAAGGTACTGATC......................................................................................................................... 17 0 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAGAA..................................................................................................................... 24 3 1 1.00 1 1
..............................................................................TACCCGATAGGGTACTGATCACT...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................AACCCGGTAAGGTACTGATCAAA...................................................................................................................... 23 3 1 1.00 1 1
..............................................................................TACCCGATACGGTACTGATGACT...................................................................................................................... 23 3 1 1.00 1 1
..............................................................................TACCCGCTAAGGTACTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTAATCAC....................................................................................................................... 22 1 1 1.00 1 1
..............................................................................TACCCGATAAGGTACTGATAACT...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATGCCT...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTACGGTACTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGGTAAGTTACTGATC......................................................................................................................... 20 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGGACTGATCACA...................................................................................................................... 23 2 1 1.00 1 1
................................................................................CCCGGTAAGGTACTGATCACT...................................................................................................................... 21 0 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATAA........................................................................................................................ 21 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCCTT...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAAGAA.................................................................................................................... 25 3 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCTAA...................................................................................................................... 23 3 1 1.00 1 1
..............................................................................TACCCGGTAAGGGACTGATCAA....................................................................................................................... 22 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGAACTGATC......................................................................................................................... 20 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCACGT..................................................................................................................... 24 1 1 1.00 1 1
..............................................................................CACCCGGTAAGGTACTGATCAC....................................................................................................................... 22 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAACT..................................................................................................................... 24 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAATTT.................................................................................................................... 25 2 1 1.00 1 1
..............................................................................TACCCGATAGGGTACTGATCAC....................................................................................................................... 22 2 1 1.00 1 1
..............................................................................CACCCGGTAAGGTACTGATC......................................................................................................................... 20 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATTACA...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGATACTGATCAC....................................................................................................................... 22 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCGT....................................................................................................................... 22 2 1 1.00 1 1
..............................................................................TACCCGGTAAAGTACTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGCTAAGGTACTGATCACA...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTAATCAGT...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCATGT..................................................................................................................... 24 2 1 1.00 1 1
..............................................................................TACCCGGGAAGGTACTGATCAC....................................................................................................................... 22 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAATA..................................................................................................................... 24 2 1 1.00 1 1
..............................................................................TACCCGGTAGGGTACTGAT.......................................................................................................................... 19 1 1 1.00 1 1
..............................................................................TACCCGCTACGGTACTGATAACT...................................................................................................................... 23 3 1 1.00 1 1
..............................................................................TACCCGCTAGGGTACTGATCACA...................................................................................................................... 23 3 1 1.00 1 1
..............................................................................TACCCGGTAAGGTCCTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCCT....................................................................................................................... 22 2 1 1.00 1 1
.............................................................................CTACCCGGTAAGGTACTGAGCACT...................................................................................................................... 24 1 1 1.00 1 1
..............................................................................TACCCGATAAGGTACTGATGACT...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCATAA..................................................................................................................... 24 3 1 1.00 1 1
...............................................................................ACCCGGTAAGGTACTGATCACT...................................................................................................................... 22 0 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGA........................................................................................................................... 18 0 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCGCT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACTCGGTAAGGTACTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCACAGT.................................................................................................................... 25 3 1 1.00 1 1
..............................................................................TACCCGGTAACGTACTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGCTACGGTACTGATCACT...................................................................................................................... 23 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAAATT.................................................................................................................... 25 3 1 1.00 1 1
.................................................................................CCGGTAAGGTACTGATCAC....................................................................................................................... 19 0 1 1.00 1 1
..................................................................................CGGTAAGGTACTGATCACA...................................................................................................................... 19 1 1 1.00 1 1
..............................................................................TACCCGGTATGGTACTGATAAC....................................................................................................................... 22 2 1 1.00 1 1
..............................................................................TACCCGGTAGGGTACTGATGA........................................................................................................................ 21 2 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATAAAAT..................................................................................................................... 24 3 1 1.00 1 1
..................................................................................CGGTAAGGTACTGATCAC....................................................................................................................... 18 0 1 1.00 1 1
..............................................................................TACCCGGGAAGGTACTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCAAAAA.................................................................................................................... 25 3 1 1.00 1 1
..............................................................................TACCCGGTACGGTACTGATCACTA..................................................................................................................... 24 2 1 1.00 1 1
..............................................................................TACCTGGTAAGGTACTGATCACT...................................................................................................................... 23 1 1 1.00 1 1
..............................................................................TACCCGGTAAGGTACTGATCTTA...................................................................................................................... 23 3 1 1.00 1 1
...........................................................CATTCTGTGTGCAGTGCCC............................................................................................................................................. 19 0 8 0.88 7 7
......................................................................................................................ATCAGTGCCTGTCTGGGTGGA................................................................................ 21 0 6 0.83 5 5
..........................................................CCATTCTGTGTGCAGTGCCC............................................................................................................................................. 20 0 8 0.75 6 6
..............................................................................TACCCGATAGGGTACTGATAACT...................................................................................................................... 23 3 2 0.50 1 1
..............................................................................TATCCGGTAAGGTACTGATCACATA.................................................................................................................... 25 2 2 0.50 1 1
..............................................................................TACCCGATAGGGTACTGATGAC....................................................................................................................... 22 3 2 0.50 1 1
..............................................................................TACCCGGTAAGGAACTGATAACA...................................................................................................................... 23 3 2 0.50 1 1
..............................................................................TACCCGGTAAGGTACTGATGCT....................................................................................................................... 22 3 2 0.50 1 1
..............................................................................TACCCGATAGGGTACTGATCA........................................................................................................................ 21 2 2 0.50 1 1
..............................................................................TACCCGGTAAGGTATTGATCAC....................................................................................................................... 22 1 2 0.50 1 1
..............................................................................TACCCGGTAAGGGAATGATCACT...................................................................................................................... 23 2 2 0.50 1 1
..............................................................................TACCCGGTAAGGTAATGATCAC....................................................................................................................... 22 1 2 0.50 1 1
..............................................................................TACCGGGTCCGGTACTGATCACT...................................................................................................................... 23 3 2 0.50 1 1
..............................................................................TACCCGATAAGGTACTGATAA........................................................................................................................ 21 2 2 0.50 1 1
..............................................................................TACCCGCTAGGGTACTGATTACT...................................................................................................................... 23 3 2 0.50 1 1
..............................................................................TACCCGGCAAGGTACTGATCACT...................................................................................................................... 23 1 2 0.50 1 1
..............................................................................TACCCGGTAAGGTAATGATCAGT...................................................................................................................... 23 2 2 0.50 1 1
..............................................................................TACCCGGTAAGGGAATGATCAG....................................................................................................................... 22 3 3 0.33 1 1
..............................................................................TACCCGGTAAGGTACTGATAAAA...................................................................................................................... 23 3 3 0.33 1 1
.....................................................................................................................GATCAGTGCCTGTCTGGGTGGA................................................................................ 22 0 6 0.33 2 2
..............................................................................TACCCGGTAAGGTACTGAAA......................................................................................................................... 20 2 3 0.33 1 1
......................................................................................................................CTCAGTGCCTGTCTGGGTGGA................................................................................ 21 1 7 0.29 2 2
..............................................................................TACCCGGTAAGGTACTGATACT....................................................................................................................... 22 3 4 0.25 1 1
...................................................................................GGTAAGGTACTGATCACA...................................................................................................................... 18 1 4 0.25 1 1
..............................................................................TACCCGGTAAGGTACTGATTCT....................................................................................................................... 22 3 5 0.20 1 1
..............................................................................TACCCGATACGGTACTGATAACT...................................................................................................................... 23 3 5 0.20 1 1
..............................................................................TACCCGATAAGGTACTGATCAAA...................................................................................................................... 23 3 5 0.20 1 1
.....................................................................................................................GATCAGTGCCTGTCTGGGTGG................................................................................. 21 0 6 0.17 1 1
......................................................................................................................ATCAGTGCCTGTCTGGGTGT................................................................................. 20 1 6 0.17 1 1
......................................................................................................................ATCAGTGCCTGTGTGGGTGG................................................................................. 20 1 6 0.17 1 1
..............................................................................TACCCGGTAAGGTACTGAAGAA....................................................................................................................... 22 3 6 0.17 1 1
......................................................................................................................ATCAGTGCCTGTCTGGGTGGAAC.............................................................................. 23 2 6 0.17 1 1
.....................................................................................................................GATCAGTGCCTGTCTGGGTGGAA............................................................................... 23 1 6 0.17 1 1
......................................................................................................................ATCAGTGCCTGTCTGGGTGG................................................................................. 20 0 6 0.17 1 1
.....................................................................................................................GATCAGTGCCTGTCTGGGTGGAT............................................................................... 23 1 6 0.17 1 1
......................................................................................................................ATCAGTGCCTGTCTGGG.................................................................................... 17 0 7 0.14 1 1
...............................................................................TACCGGTAAGGTACTGATCACT...................................................................................................................... 22 2 7 0.14 1 1
..........................................................CCATTCTGTGTGCAGTGCCT............................................................................................................................................. 20 1 8 0.13 1 1
.............................................................TTCTGTGTGCAGTGCCC............................................................................................................................................. 17 0 9 0.11 1 1
......................................................................................................................ATCAGTGCCTGTCTGGCTGGAT............................................................................... 22 2 9 0.11 1 1
..............................................................................TACCCGGTAGGGTACTGATGT........................................................................................................................ 21 3 9 0.11 1 1

Anti-sense strand reads

TCCCTACTTTCCATGAAAACTTTTACACTCCTCTTGACCCGTCTAAGAGATGAAACTCGGTAAGACACACGTCACGGGATGGGCCATTCCATGACTAGTGAATGAATCTGATGTACACTAGTCACGGACAGACCCACCTCATTACGAGATGTTCTCGTTGCAAACCCTCCCAGAAGTCTGAGGAGGACCCTTACCTCTACCTACACAGACATTCCACGG

*****************************************************************.((((.(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))..))))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:17 PM