ID:

eca-mir-8908c-2

 Coordinate:

chrX:115864611-115864755 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.3 -56.1 -56.0
mature

  1. eca-mir-8908c-1  chrX:115857902-115857923 -
  2. eca-mir-8908c-2  chrX:115864652-115864673 -
  3. eca-mir-8908c-3  chrX:115873290-115873311 -
star

Sense Strand Reads

CAACATGTTGTGCTGGGAGAGAATGAAAGCTTCATCTGAGAGTGTGAGAAGGACTGGGCAGATCCTCCACCCTGAGCCATGCTGTATGCAGTGCCCTGCCCAGAAGGTACTTATCACTTAGCCTACGTGTAATTAGTACCTGTCCGGGTAGAGTAATGCTCAAGCAGACCATCATTTTTGGAGGCCTTCTGACCGGTGATGGAGATGGAGAAGCAGATGCACGTGTCCTTGAGTTGTGTGCCTTG

***********************************.................(((((.((((.((((((...(((....((((....(((.(((.((((((.(((((((((...(((.........))).....))))))).)).)))))).))).)))...)))).....)))....))))))...)))).))))).............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................................................TTAGTACCTGTCCGGGTAGAGT........................................................................................... 22 0 3 2.33 7 7
..................................................................................................................................AATTAGTACCTGTCCGGGTAGA............................................................................................. 22 0 3 1.67 5 5
..................................................................................................................................AATTAGTACCTGTCCGGG................................................................................................. 18 0 3 1.33 4 4
..................................................................................................................................AATTAGTACCTGTCCGGGTAGAAT........................................................................................... 24 1 3 1.00 3 3
.....................................GAGAGTGTGAGAAGGACTGGGCAGATCC.................................................................................................................................................................................... 28 0 2 0.50 1 1
....................................................................................................................................TTAGTACCTGTCCGGGTAGAAA........................................................................................... 22 2 3 0.33 1 1
....................................................................................................................................TTAGTACCTGTCCGGGTAGAGTAT......................................................................................... 24 1 3 0.33 1 1
..................................................................................................................................AATTAGTACCTGTCCGGGTAGAT............................................................................................ 23 1 3 0.33 1 1
....................................................................................................................................TTAGTACCTGTCCGGGTAGAGTT.......................................................................................... 23 1 3 0.33 1 1
.................................................................................................................................TAATTAGTACCTGTCCGGGTAAA............................................................................................. 23 1 3 0.33 1 1
....................................................................................................................................TTAGTACCTGTCCGGGTAGAGAA.......................................................................................... 23 1 3 0.33 1 1
..................................................................................................................................AATTAGTACCTGTCCGGGTAGAATT.......................................................................................... 25 2 3 0.33 1 1
....................................................................................................................................TTAGTACCTGTCCGGGTAGAA............................................................................................ 21 1 3 0.33 1 1
..................................................................................................................................AATTAGTACCTGTCCGGGTAGAGT........................................................................................... 24 0 3 0.33 1 1
..................................................................................................................................AATTAGTACCTGGCCGGGTAGA............................................................................................. 22 1 3 0.33 1 1
..................................................................................................................................CATTAGTACCTGTCCGGGTAGT............................................................................................. 22 2 6 0.17 1 1
..................................................................................................................................CATTAGTACCTGTCCGGG................................................................................................. 18 1 8 0.13 1 1
..................................................................................................................................AATTAGTACCTGTCGGGG................................................................................................. 18 1 8 0.13 1 1
....................................................................................................................................TTAGTACCTGTCGGGGTAGAGT........................................................................................... 22 1 11 0.09 1 1

Anti-sense strand reads

GTTGTACAACACGACCCTCTCTTACTTTCGAAGTAGACTCTCACACTCTTCCTGACCCGTCTAGGAGGTGGGACTCGGTACGACATACGTCACGGGACGGGTCTTCCATGAATAGTGAATCGGATGCACATTAATCATGGACAGGCCCATCTCATTACGAGTTCGTCTGGTAGTAAAAACCTCCGGAAGACTGGCCACTACCTCTACCTCTTCGTCTACGTGCACAGGAACTCAACACACGGAAC

***********************************.................(((((.((((.((((((...(((....((((....(((.(((.((((((.(((((((((...(((.........))).....))))))).)).)))))).))).)))...)))).....)))....))))))...)))).))))).............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:16 PM