ID:

eca-mir-8908b-2

 Coordinate:

chrX:115875682-115875772 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.4 -35.3 -35.3
mature

  1. eca-mir-8908b-3  chrX:115855337-115855358 -
  2. eca-mir-8908b-5  chrX:115862159-115862180 -
  3. eca-mir-8908b-4  chrX:115870798-115870819 -
  4. eca-mir-8908b-2  chrX:115875697-115875718 -
  5. eca-mir-8908b-1  chrX:115877556-115877577 -
star

Sense Strand Reads

ATGCTTCCACTGAGAGTGTGAGGAAGACTGGGCAGATGCACCACCTTGAGCCATGCTGTGTGCGGTGCAGTATCCAGAAGGTACTGATCACTCAGCCTGCGTGTAATTAGTACCTGTCTGGGTAGAGTACGCTCAACAAGACAACATTTGTGGAGGCCTTCATACTGGTGAATAGGATTAAATTGACTTTT

*******************************************************.((((.(((.(((..(((((((((((((((((((((.((...)).)))..)))))))))).))))))))..)))))).)).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................................................AATTAGTACCTGTCTGGGTAGA................................................................. 22 0 5 16.60 83 83
........................................................................................................AATTAGTACCTGTCTGGGTAGAAT............................................................... 24 1 5 11.60 58 58
......................................................................TATCCAGAAGGTACTGATCAC.................................................................................................... 21 0 1 8.00 8 8
........................................................................................................AATTAGTACCTGTCTGGG..................................................................... 18 0 5 7.60 38 38
......................................................................TATCCAGAAGGTACTGATCACT................................................................................................... 22 0 1 6.00 6 6
........................................................................................................AATTAGTACCTGTCTGGGTAGAATT.............................................................. 25 2 5 3.80 19 19
........................................................................................................AATTAGTACCTGTCTGGGTAGAT................................................................ 23 1 5 2.60 13 13
.......................................................................................................TAATTAGTACCTGTCTGGGTAGA................................................................. 23 0 5 1.40 7 7
........................................................................................................AATTAGTACCTGTCTGGGTAGT................................................................. 22 1 5 1.20 6 6
........................................................................................................AATTAGTACCTGTCTGGGTAGAA................................................................ 23 1 5 1.20 6 6
........................................................................................................AATTAGTACCTGTCTGGGTAG.................................................................. 21 0 5 1.20 6 6
......................................................................TATCCAGAAGGTACTGATCACTCAGCCT............................................................................................. 28 0 1 1.00 1 1
......................................................................TATCCAGAAGGTACTGATCACTAA................................................................................................. 24 1 1 1.00 1 1
......................................................................TATCCAGAAGGTACTGATC...................................................................................................... 19 0 1 1.00 1 1
.......................................................................................................TAATTAGTACCTGTCTGGGTAGAAT............................................................... 25 1 5 0.80 4 4
........................................................................................................AATTAGTACCTGTCTGGGTAGAAA............................................................... 24 2 5 0.80 4 4
........................................................................................................AATTAGTACCTGTCTGGGTAGC................................................................. 22 1 5 0.60 3 3
.......................................................................................................TAATTAGTACCTGTCTGGGTAGT................................................................. 23 1 5 0.60 3 3
........................................................................................................AATTAGTACCTGTCTGGGTAGATT............................................................... 24 1 5 0.40 2 2
........................................................................................................AATTAGTACCTGTCTGGGT.................................................................... 19 0 5 0.40 2 2
........................................................................................................AATTAGTACCTGTCTGGGTAGAACT.............................................................. 25 3 5 0.40 2 2
.......................................................................................................TAATTAGTACCTGTCTGGG..................................................................... 19 0 5 0.40 2 2
........................................................................................................AATTAGTACCTGTCTGGGTAGATA............................................................... 24 2 5 0.40 2 2
.........................................................................................................ATTAGTACCTGTCTGGGTAGA................................................................. 21 0 8 0.38 3 3
........................................................................................................AATTAGTACCTGTCTGGGAAGA................................................................. 22 1 5 0.20 1 1
........................................................................................................AATTAGTACCTGTCTGGGTCGA................................................................. 22 1 5 0.20 1 1
........................................................................................................AATTAGTACCTGTCTGGGAAG.................................................................. 21 1 5 0.20 1 1
........................................................................................................AATTAGTACCCGTCTGGGTAGA................................................................. 22 1 5 0.20 1 1
........................................................................................................AATTAGTACCTGTCTGGGTAGACT............................................................... 24 1 5 0.20 1 1
........................................................................................................AATTAGTACCTGTCTGGGTAA.................................................................. 21 1 5 0.20 1 1
......................................................................TATCCGGAAGGTACTGATCACA................................................................................................... 22 2 5 0.20 1 1
........................................................................................................AATTAGTACCTGCCTGGGTAGAAT............................................................... 24 2 5 0.20 1 1
.......................................................................................................TAATTAGTAGCTGTCTGGGGAGA................................................................. 23 2 5 0.20 1 1
........................................................................................................AGTTAGTACCTGTCTGGGTAGAATT.............................................................. 25 3 5 0.20 1 1
........................................................................................................AATTAGTACCTGACTGGGTAGA................................................................. 22 1 5 0.20 1 1
.......................................................................................................TAATTAGTACCTGTCTGGGT.................................................................... 20 0 5 0.20 1 1
........................................................................................................AATTAGTACGTGTCTGGGTCGA................................................................. 22 2 5 0.20 1 1
........................................................................................................AATTAGTACCTGTCTG....................................................................... 16 0 6 0.17 1 1
........................................................................................................AATTAGTACCTGTCTGGGTAGATTT.............................................................. 25 2 6 0.17 1 1
........................................................................................................AATTAGTACCTGTCTGGGTAGAAGT.............................................................. 25 3 6 0.17 1 1
........................................................................................................AATTAGTACCTGTCTGGGTAGAATCT............................................................. 26 3 6 0.17 1 1
........................................................................................................AATTAGTACCTGTCTGGGTATG................................................................. 22 2 6 0.17 1 1
........................................................................................................AATTAGTACGTGTCTGGG..................................................................... 18 1 6 0.17 1 1
........................................................................................................AATTAGTACCTCTCTGGG..................................................................... 18 1 7 0.14 1 1
........................................................................................................AATTAGTACCTGTCGGGG..................................................................... 18 1 8 0.13 1 1
........................................................................................................TATTAGTACCTGTCTGGGTAGATTG.............................................................. 25 3 9 0.11 1 1
........................................................................................................AATTAGTACCTGGCTGGG..................................................................... 18 1 9 0.11 1 1
........................................................................................................AATTAGTACCTGTCTGGA..................................................................... 18 1 10 0.10 1 1
..........................................................................................................TTAGTACCTGTCGGGGTAGAGT............................................................... 22 1 11 0.09 1 1
........................................................................................................GATTAGTACCTGTCTGGG..................................................................... 18 1 13 0.08 1 1
........................................................................................................AATTAGTACTTGTCTGGGTATT................................................................. 22 3 20 0.05 1 1

Anti-sense strand reads

TACGAAGGTGACTCTCACACTCCTTCTGACCCGTCTACGTGGTGGAACTCGGTACGACACACGCCACGTCATAGGTCTTCCATGACTAGTGAGTCGGACGCACATTAATCATGGACAGACCCATCTCATGCGAGTTGTTCTGTTGTAAACACCTCCGGAAGTATGACCACTTATCCTAATTTAACTGAAAA

**************************************************.((((.(((.(((..(((((((((((((((((((((.((...)).)))..)))))))))).))))))))..)))))).)).))...******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM