ID:

eca-mir-889

 Coordinate:

chr24:42917940-42918017 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.1 -32.9 -32.9

Sense Strand Reads

CGGTGACTTTGGAGAAGACGCTGAGCTCTTCTGGATGGCGCAGGTCTTTGGTGCTTAAAGAATGGCTGTCTGTAGTATGGTCTCCATATTCATGGTGATTAATATCGGACAACCATTGTTTTAGTATCAAATTTGCTTCACAAGTTTTCTCCAGCGCCGTGCCGACTTCAGCAAGAGA

*********************************************.(((((((((.(((.(((((.((((((..((.(((((.((((....)))).)))))))..)))))).))))).))).)))))))))...******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................TTAATATCGGACAACCATTGT........................................................... 21 0 1 1154.00 1154 1154
..................................................................................................TTAATATCGGACAACCATTGC........................................................... 21 1 1 64.00 64 64
..................................................................................................TTAATATCGGACAACCATTGTT.......................................................... 22 0 1 50.00 50 50
..................................................................................................TTAATATCGGACAGCCATTGT........................................................... 21 1 1 16.00 16 16
............................................................AATGGCTGTCTGTAGTATGGTC................................................................................................ 22 0 1 13.00 13 13
..................................................................................................TTAATATCGGACAGCCATTGC........................................................... 21 2 1 10.00 10 10
..................................................................................................TTAATATCGGACAACCATTAT........................................................... 21 1 1 8.00 8 8
..................................................................................................TTAATATCGGACAACCATTGTAA......................................................... 23 2 1 7.00 7 7
..................................................................................................TTAATATCGGACAACCATTGTTA......................................................... 23 1 1 7.00 7 7
..................................................................................................TTAATATCGGACAACCGTTGT........................................................... 21 1 1 7.00 7 7
..................................................................................................TTAATATCGGACAACCATTGTTT......................................................... 23 0 1 6.00 6 6
..................................................................................................TTAATATCGGACAACCATTGTA.......................................................... 22 1 1 5.00 5 5
..................................................................................................TTAATATCGGAGAACCATTGT........................................................... 21 1 1 5.00 5 5
..................................................................................................TTAATAGCGGACAACCATTGT........................................................... 21 1 1 4.00 4 4
..................................................................................................TTAATACCGGACAACCATTGT........................................................... 21 1 1 4.00 4 4
..................................................................................................TTAATATCGGACAACCATTGTC.......................................................... 22 1 1 4.00 4 4
..................................................................................................TTAATATCGGACAACCATTCT........................................................... 21 1 1 4.00 4 4
..................................................................................................TTAATATCGGACAACCAT.............................................................. 18 0 1 3.00 3 3
..................................................................................................TTAATATCGGACAACCATTGCT.......................................................... 22 1 1 3.00 3 3
..................................................................................................TTAATATCGGACAACCATTG............................................................ 20 0 1 3.00 3 3
...........................................................GAATGGCTGTCTGTAGTATGGTC................................................................................................ 23 0 1 3.00 3 3
..................................................................................................TTAATATCGCACAACCATTGT........................................................... 21 1 1 2.00 2 2
..................................................................................................TTAATATCGGACAACCATTGCCT......................................................... 23 2 1 2.00 2 2
..................................................................................................GTAATATCGGACAACCATTGT........................................................... 21 1 1 2.00 2 2
..................................................................................................TTAATATCGAACAACCATTGT........................................................... 21 1 1 2.00 2 2
..................................................................................................TTAATATCGGACAAGCATTGT........................................................... 21 1 1 2.00 2 2
..................................................................................................TTGATATCGGACAACCATTGT........................................................... 21 1 1 2.00 2 2
..................................................................................................TTAATATCGGACAACCATTGCA.......................................................... 22 2 1 2.00 2 2
..................................................................................................TTAATATCGGACCACCATTGT........................................................... 21 1 1 2.00 2 2
...........................................................GAATGGCTGTCTGTAGTATGGT................................................................................................. 22 0 1 2.00 2 2
..................................................................................................TTAATATCGGAAAACCATTGT........................................................... 21 1 1 2.00 2 2
..................................................................................................TTAATATCGGACGACCATTGT........................................................... 21 1 1 2.00 2 2
..................................................................................................TTAATATCGGACAACCATTGA........................................................... 21 1 1 2.00 2 2
..................................................................................................TTAATATCGGACAACCATTGAAA......................................................... 23 3 3 1.00 3 3
............................................................AATGGCTGTCTGTAGTATGGT................................................................................................. 21 0 1 1.00 1 1
............................................................AATGGCTGTCTGTAGTATGGTAA............................................................................................... 23 2 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTGATA......................................................... 23 2 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTTCT.......................................................... 22 2 1 1.00 1 1
..................................................................................................TGAATATCGGACAACCATTGT........................................................... 21 1 1 1.00 1 1
..................................................................................................TTAATATCGGTCAACCATTGT........................................................... 21 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAGCCATTG............................................................ 20 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTGTCT......................................................... 23 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAACC................................................................ 16 0 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCCTTGT........................................................... 21 1 1 1.00 1 1
.................................................................................................CTTAATATCGGACAACCATTGT........................................................... 22 1 1 1.00 1 1
............................................................AATGGCTGTCTGTAGTATGGA................................................................................................. 21 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAAGCGTTGT........................................................... 21 2 1 1.00 1 1
...........................................................GAATGGCTGTCTGTAGTATG................................................................................................... 20 0 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTGTGT......................................................... 23 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTGGT.......................................................... 22 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAACTATTGT........................................................... 21 1 1 1.00 1 1
................................................................................................GATTAATATCGGACAACCATTGT........................................................... 23 0 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTGG........................................................... 21 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAAACGTTGT........................................................... 21 2 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTTT........................................................... 21 1 1 1.00 1 1
...................................................................................................TAATATCGGACAACCATTGT........................................................... 20 0 1 1.00 1 1
..................................................................................................TTAATAACGGACAACCATTGT........................................................... 21 1 1 1.00 1 1
..................................................................................................TTAATATCGGACAACCATTA............................................................ 20 1 1 1.00 1 1
............................................................CATGGCTGTCTGTAGTATGGTC................................................................................................ 22 1 1 1.00 1 1
..................................................................................................TTAATACCGCACAACCATTGT........................................................... 21 2 2 0.50 1 1
..................................................................................................TTAATATCGTACAACCATTAT........................................................... 21 2 2 0.50 1 1
..................................................................................................TTAATATCGAACAACCATTAT........................................................... 21 2 4 0.25 1 1
..................................................................................................TTAATAGCGAACAACCATTCT........................................................... 21 3 20 0.05 1 1

Anti-sense strand reads

GCCACTGAAACCTCTTCTGCGACTCGAGAAGACCTACCGCGTCCAGAAACCACGAATTTCTTACCGACAGACATCATACCAGAGGTATAAGTACCACTAATTATAGCCTGTTGGTAACAAAATCATAGTTTAAACGAAGTGTTCAAAAGAGGTCGCGGCACGGCTGAAGTCGTTCTCT

********************************************.(((((((((.(((.(((((.((((((..((.(((((.((((....)))).)))))))..)))))).))))).))).)))))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM